PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC054892.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 742aa MW: 82080.3 Da PI: 6.8713 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1.1e-20 | 20 | 75 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le +F+++++p++++r eL+++lgL rq+k+WFqNrR+++k EcC054892.60 20 KKRYHRHTAHQIQRLEGMFRECPHPDEKQRMELSRELGLAPRQIKFWFQNRRTQMK 75 688999***********************************************998 PP | |||||||
2 | START | 147.1 | 1.7e-46 | 218 | 472 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 +a a++e++++a+ +ep+W+ks +++n + + + f+++ + ++ea+r+s+vv m+ l +++++ +W e ++ +a+t+ev EcC054892.60 218 IAANALDEFLRLAQTDEPLWMKSTtdgrDNLNLESYERMFPRASShlknpdVRVEASRESRVVMMNGLALIDMFMNSN-KWAELFPaivsAAKTIEV 313 577899*********************99999999999999988899***99**************************.****************** PP ECTT....................................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE CS START 85 issg....................................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR 144 is+g + +m+ elq+lspl p R+f+f+Ry++q + g w+ivdvS d ++ + + R EcC054892.60 314 ISPGlltsqngslqlvthfasphllrisylatcfklnshpWEKMQMYEELQVLSPLIPtREFYFLRYCQQIEPGLWAIVDVSFDLSRYDQ-FAFQSR 409 **************************************998888999******************************************9.79999* PP -EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 145 aellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++lpSg+li++++ng+skvtwvehv+ +++ p h l+r l+ +gla+ga +w atl+r ce+ EcC054892.60 410 SQRLPSGCLIQDLPNGYSKVTWVEHVEIEDKAPvHRLYRDLIYNGLAFGAERWIATLERMCER 472 *************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-21 | 6 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 9 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.961 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-19 | 18 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.5E-18 | 20 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.03E-18 | 20 | 78 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.715 | 208 | 475 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.33E-32 | 209 | 319 | No hit | No description |
CDD | cd08875 | 1.19E-109 | 212 | 471 | No hit | No description |
SMART | SM00234 | 6.6E-33 | 217 | 472 | IPR002913 | START domain |
Pfam | PF01852 | 2.3E-39 | 218 | 472 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.33E-32 | 357 | 473 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.5E-4 | 365 | 440 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.19E-22 | 493 | 734 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0035556 | Biological Process | intracellular signal transduction | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 742 aa Download sequence Send to blast |
MDFGGGSGGD HDGSDHQKRK KRYHRHTAHQ IQRLEGMFRE CPHPDEKQRM ELSRELGLAP 60 RQIKFWFQNR RTQMKAQHER ADNCALRAEN DRIRCENIVI REALRNVICP SCGTVPSGED 120 SYFDEQKLRM ENAHLKEELD RVSSIAAKYI GRPMSQLPPV QPIHIASLDL TMSSLGAHGL 180 AGPSLDLDLL PGSSSSVPHL PFQAVVFSDM DKSLMADIAA NALDEFLRLA QTDEPLWMKS 240 TTDGRDNLNL ESYERMFPRA SSHLKNPDVR VEASRESRVV MMNGLALIDM FMNSNKWAEL 300 FPAIVSAAKT IEVISPGLLT SQNGSLQLVT HFASPHLLRI SYLATCFKLN SHPWEKMQMY 360 EELQVLSPLI PTREFYFLRY CQQIEPGLWA IVDVSFDLSR YDQFAFQSRS QRLPSGCLIQ 420 DLPNGYSKVT WVEHVEIEDK APVHRLYRDL IYNGLAFGAE RWIATLERMC ERIACLMVTG 480 SSTRDTRGVI PSPDGKRSMM KLAQRMVNNF CSSISTSSSR QQRWTTLSGS SEVGVRVALH 540 KSTDPGQPNG VVLSAATTIW LPLSPQNIFN FFKDERTRAQ WDVLSNGNAV QEVAHLANGS 600 HPGNCISVLR AFNTSQNNML ILQESCIDSS GSLIVYCPVD LPAINLAMSG EDPSYIPLLP 660 SGFTISPDGG PDPGDGASSS SAAAAGQGST GRSAGSLMTV AFQILVSSLP SAKLNLESVT 720 TVNNLISTTV HQIKAALNCP GS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069492.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A059AW26 | 0.0 | A0A059AW26_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069492.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |