PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054880.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 316aa    MW: 35132.5 Da    PI: 8.3
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054880.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.41.4e-1631123187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                   +W+++ + +Liea  ++  +l+rg+l++++W+ev++++     ++++ +r+ +qCk++++ ++k+yk +k++ +++   +  s +++fd+l+a
  EcC054880.80  31 CWSEEATATLIEAWGRRYVDLNRGNLRQKDWQEVADAVnarhgHSKKTHRTDVQCKNRIDTVKKKYKIEKARISSGgGGGGASPWVFFDRLDA 123
                   7**************************************999999999***********************9999856888899******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-2629124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0015074Biological ProcessDNA integration
GO:0015743Biological Processmalate transport
GO:0030001Biological Processmetal ion transport
GO:0005615Cellular Componentextracellular space
GO:0003676Molecular Functionnucleic acid binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0019904Molecular Functionprotein domain specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGDLIEYVSP SPSQGGGGGG HGRPLPVRED CWSEEATATL IEAWGRRYVD LNRGNLRQKD  60
WQEVADAVNA RHGHSKKTHR TDVQCKNRID TVKKKYKIEK ARISSGGGGG GASPWVFFDR  120
LDALIGSSSS SSSAGKKPSP SPSVSPLSPP VALPLPYKKT PSAVVAAVAL PQKRPAERVD  180
EGYFRRNYSE VAAAAAAAGV DDEEEDEEER DEDRDSEEDE GEGMRRLAKA IERFGEVYQR  240
VEAEKLRQMV DLEKQRMQFA KDLEVQRLKM FMDTQVQLER IKHAKRSGSD GEKIKNIIFA  300
CVRVLFRCLL RAYPSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057099.11e-153PREDICTED: trihelix transcription factor ASIL1-like isoform X2
TrEMBLA0A2I0L8671e-117A0A2I0L867_PUNGR; Uncharacterized protein
STRINGXP_010057098.11e-151(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-42sequence-specific DNA binding transcription factors