PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054848.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 655aa    MW: 71686.4 Da    PI: 8.9534
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054848.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06232252526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    Cr++++ G C  G++CkF+H+
  EcC054848.20 232 YCRHYLQ-GRCTEGEKCKFSHD 252
                   5******.*************7 PP
2zf-CCCH17.67.1e-06287307525
                   --SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                   +C+++a  G+C++Gd+C F+H
  EcC054848.20 287 PCSNYASKGFCSRGDNCMFSH 307
                   7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.469227254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6228252IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4228253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5232252IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4232252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.329257281IPR000571Zinc finger, CCCH-type
SMARTSM003560.24259283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713282310IPR000571Zinc finger, CCCH-type
SMARTSM003560.06285309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5286311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5287311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006486Biological Processprotein glycosylation
GO:0007165Biological Processsignal transduction
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008378Molecular Functiongalactosyltransferase activity
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
RDTDVHLPDS TLNLPQEVTE EQDAEEGEIS DSIRVEGTGS NMRLDDIAVS NKLLNNEQVV  60
ESVTDEGQKG KLETKSGVSS FGDEMDHDVA NVRKAENHEN NGGKKICEPQ MAFHGKSVVM  120
EAEKVGTHCP SIEDKKAKKQ GSIVSEDVTP HAGRCNDIVS YADIYLEKKS EDQGAVNTLK  180
ELQDKKKRRT LSKERKEKKK QKERRKRAQK NRELGVKRLK LQPVLKQKTV TYCRHYLQGR  240
CTEGEKCKFS HDTVPLTKST KPCCHYARNS CMKGEDCPFD HQLSKYPCSN YASKGFCSRG  300
DNCMFSHKIE DSTIASNTCN NESNHPAMPL IPKKQPGTIV GSHENNAHTA VDASHATCKY  360
LKPNMIGSST NLPVLKPVRG SSNSADKSLL ISFNKSEMGS SSTKDGSRIG IHTGENASGT  420
VQNVDTISKT TPLLPPKGVN FLSFGSSSNQ MDMKKPANFL FNTSKVNILK HATSTQQKGH  480
SNNIVNDETQ PMSMLPNSNE ATERIEPVVK PEDLMLFSSR KASLHDFTPG EKSSSSSVGN  540
DAIDRSLQGK PSASSTTQNS SMTTWKLPVC PITPGQPSDS TPRLYRNISS SAQKALSSTL  600
AFAAMFETDT RSKHVDGHRA VTGKAGEDSA RGLQNDSAKA SKILDLLANI GKKKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188KKKRR
2186206KRRTLSKERKEKKKQKERRKR
3194206RKEKKKQKERRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048162.10.0PREDICTED: uncharacterized protein LOC104437009
TrEMBLA0A059CPF50.0A0A059CPF5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010048162.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516