PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054749.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 752aa    MW: 84294.8 Da    PI: 6.6521
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054749.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24169270199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++e
  EcC054749.40 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSVFVSQKNLVSGDAVLFL--RGEDGE 262
                   99****************************963.3445679************************************************..449999 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++++r+
  EcC054749.40 263 LRLGIRRA 270
                   *****996 PP
2Auxin_resp85.88.4e-293253891882
    Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                   ras++eFvv+++k++k++++ +++G Rfkm+++ +d++e+r++G+v+ + dldp+rWpnSkWr+L
  EcC054749.40 325 RASHAEFVVPYQKYLKSINNVICIGARFKMRVDVDDAPEKRCTGVVTRIGDLDPYRWPNSKWRCL 389
                   99**************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-41161278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-45162286IPR015300DNA-binding pseudobarrel domain
CDDcd100176.41E-23167269No hitNo description
PfamPF023621.6E-22169270IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197169271IPR003340B3 DNA binding domain
SMARTSM010191.8E-23169271IPR003340B3 DNA binding domain
PfamPF065079.2E-24324389IPR010525Auxin response factor
PfamPF023092.2E-7623709IPR033389AUX/IAA domain
PROSITE profilePS5174519.298624706IPR000270PB1 domain
SuperFamilySSF542771.05E-8626703No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009725Biological Processresponse to hormone
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003995Molecular Functionacyl-CoA dehydrogenase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0045145Molecular Functionsingle-stranded DNA 5'-3' exodeoxyribonuclease activity
GO:0045735Molecular Functionnutrient reservoir activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MEIDLNHAVS DVENASNACC DGHCEKGNGC LHCLSSTSSN SSSSSSSSAV PCSIYSELWH  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXANK  120
DNDEVYTKVT LLPQLELVGL DSEGRALEEL GVDENDIGGS PPRSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSV  240
FVSQKNLVSG DAVLFLRGED GELRLGIRRA HRPRNVLPGS TVGDQNMCPA VLSAVASAVS  300
TKSVFHVFYS PRQLYLLSDK MAKCRASHAE FVVPYQKYLK SINNVICIGA RFKMRVDVDD  360
APEKRCTGVV TRIGDLDPYR WPNSKWRCLM VQWDDDIMNG HQDRVSPWEI DPSVSHSPLS  420
IQSSPRLKRP RTSLPTMPPV PGGGVGLLDF EESLRSSKVL QGQEKLHLVS PVYGRDTLNC  480
QVNFEQSPAH QGLASVGVEK ANNINEYMRA NAPSYAGFVE SDRFPRVLQG QEICTLKSLT  540
TKPEYNLGTW GKSSLSCSSF GVHQAPKYHF DQVKSSESLQ KVYFPYNDIL KSSQDRTRCS  600
DSTNFLREVA SVRSLRVQNE AIERTKVDVH KQGNLVGRAI DLSRLNSYQD LLNDLERLFS  660
MEGLLRDHDK GWRILYTDSE NDVMVLGDIP WHEFCDVVTK IHIYTQEEVE KMTTGVISDD  720
TQSCLDQAPL MMEASKSSSV GQPDGSPTVV RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-9011841784359Auxin response factor 1
4ldy_B2e-9011841784359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043718.10.0PREDICTED: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A059D5410.0A0A059D541_EUCGR; Auxin response factor
STRINGXP_010043718.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]