PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054718.160
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 286aa    MW: 31382.1 Da    PI: 9.0908
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054718.160genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.2e-4295171278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC+adls+++eyhrrhkvCevhsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  EcC054718.160  95 CLVDGCNADLSNCREYHRRHKVCEVHSKTPEVTINGRKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 171
                    **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-3488156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.40292169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3993174IPR004333Transcription factor, SBP-box
PfamPF031101.6E-3195168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0030001Biological Processmetal ion transport
GO:0045492Biological Processxylan biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008641Molecular Functionsmall protein activating enzyme activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
VEGLMDWNLK APWDLTEFGQ ETLPGSHGAD GPNSYGIPSA KGEFSVDLKL GQMSNTVNEP  60
VNMWKDSGVS KMASSPSGSS KRARSVSSGG QAVHCLVDGC NADLSNCREY HRRHKVCEVH  120
SKTPEVTING RKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PDPLSRSADI  180
LSSFRGPQLV PLSNSQVYPT TAVGNPTWAG VVNPEPEAAL YARHQHLYGS SSSIYGGGKQ  240
IKFLQGNNPV LSSQMSAESS VCQQLPRTIV SSDSGGLGRN MFYDRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-30951681184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151168KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037393.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037395.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037396.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037397.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037398.10.0PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI201e-66SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-66SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A059A6W50.0A0A059A6W5_EUCGR; Uncharacterized protein
STRINGXP_010037393.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-64SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]