PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054699.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YA
Protein Properties Length: 323aa    MW: 35684.1 Da    PI: 8.9696
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054699.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.95.9e-32164220158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQy++Il+RRq Rakl +e+kl +k rkpylheSRh+hA+rRpRgsgGrF
  EcC054699.100 164 EEPVYVNAKQYHGILRRRQYRAKLGAENKL-IKDRKPYLHESRHHHAVRRPRGSGGRF 220
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-35162223IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.225163223IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-27165220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23166188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23197220IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000045Biological Processautophagosome assembly
GO:0000290Biological Processdeadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0006090Biological Processpyruvate metabolic process
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0015979Biological Processphotosynthesis
GO:0016567Biological Processprotein ubiquitination
GO:0031347Biological Processregulation of defense response
GO:0045087Biological Processinnate immune response
GO:0055114Biological Processoxidation-reduction process
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0005669Cellular Componenttranscription factor TFIID complex
GO:0009654Cellular Componentphotosystem II oxygen evolving complex
GO:0045254Cellular Componentpyruvate dehydrogenase complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0004742Molecular Functiondihydrolipoyllysine-residue acetyltransferase activity
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSWYVGSSPS REASTISQFG LVPMPKGSSI KMGVPLQHSS GIKQLNVHFQ ERDLCSTQST  60
SQSLSEVPNI GGSTDCSQAS VLEQTEHGET EGQSVRGQAK SALSMGTQDL VFQPLEVCIP  120
LHYAEPSLGG FMPAAYRPQA MISYPQMAGT IPSRLPLPFD TTQEEPVYVN AKQYHGILRR  180
RQYRAKLGAE NKLIKDRKPY LHESRHHHAV RRPRGSGGRF LSKDQKESKL TSLNDESNVK  240
STARVSSAID LPNSEVFQLK DHRDTGSTTS CSKTTQTTTS SDAIPVSKFR FFGQPWHVMT  300
TCDPSCDVRY SGDIRHLSLP GER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-22164228266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018731962.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLA0A059BUY41e-129A0A059BUY4_EUCGR; Uncharacterized protein
STRINGXP_010062677.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-52nuclear factor Y, subunit A3