PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054698.80 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YB | ||||||||
Protein Properties | Length: 156aa MW: 17456.5 Da PI: 4.3465 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 69.4 | 6.5e-22 | 13 | 96 | 5 | 88 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 d+ +++i+k++lP + ++++da++++ ec +efi +v+se++d c+re+++ti+++ +l al lGf +y+e++ + + EcC054698.80 13 DAXXXXXTMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYE 96 5555666789*******************************************************************9865443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.3E-35 | 12 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.39E-31 | 20 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-18 | 20 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006096 | Biological Process | glycolytic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0007018 | Biological Process | microtubule-based movement | ||||
GO:0009446 | Biological Process | putrescine biosynthetic process | ||||
GO:0015914 | Biological Process | phospholipid transport | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0000015 | Cellular Component | phosphopyruvate hydratase complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000287 | Molecular Function | magnesium ion binding | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0003777 | Molecular Function | microtubule motor activity | ||||
GO:0004012 | Molecular Function | phospholipid-translocating ATPase activity | ||||
GO:0004634 | Molecular Function | phosphopyruvate hydratase activity | ||||
GO:0004668 | Molecular Function | protein-arginine deiminase activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005509 | Molecular Function | calcium ion binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008017 | Molecular Function | microtubule binding | ||||
GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | ||||
GO:0016844 | Molecular Function | strictosidine synthase activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
GO:0047632 | Molecular Function | agmatine deiminase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDPMDIVGKS KEDAXXXXXT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND 60 VCNREEKRTI APEHVLKALE VLGFGEYIEE VYAAYEQHKH ETMQDSLKGG KWSNGAEMTE 120 EALLAEQQRM FAEARARMNG GAAVPKQADV DSNVES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 7e-32 | 12 | 135 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031455.1 | 1e-109 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_010031462.1 | 1e-109 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_018723264.1 | 1e-109 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Refseq | XP_018723265.1 | 1e-109 | PREDICTED: protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 1e-89 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A059D039 | 1e-107 | A0A059D039_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031447.1 | 1e-108 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 5e-92 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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