PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054678.140
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 159aa    MW: 17511.9 Da    PI: 8.2239
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054678.140genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601383.3e-4391081100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +Ca+Ck+lrr+C+kdC++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg+i+ lq+q+++l+ +la+
  EcC054678.140   9 PCASCKLLRRRCSKDCIFAPYFPPHDPHKFAIVHKVFGASNLSKMLQELPVNQRGDAVSSLVYEANARVRDPVYGCVGTISYLQNQVSELQLQLAA 104
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++e
  EcC054678.140 105 AQAE 108
                    9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3988109IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-439106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046274Biological Processlignin catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0016020Cellular Componentmembrane
GO:0048046Cellular Componentapoplast
GO:0005507Molecular Functioncopper ion binding
GO:0005515Molecular Functionprotein binding
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0016758Molecular Functiontransferase activity, transferring hexosyl groups
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0052716Molecular Functionhydroquinone:oxygen oxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGGSSGSSPC ASCKLLRRRC SKDCIFAPYF PPHDPHKFAI VHKVFGASNL SKMLQELPVN  60
QRGDAVSSLV YEANARVRDP VYGCVGTISY LQNQVSELQL QLAAAQAEVL SLQMHQKPHL  120
VQQDRETSFL MAGDNFNSVS HYIAASVIQD PLKRESFST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-4751107112LOB family transfactor Ramosa2.1
5ly0_B5e-4751107112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045372.11e-116PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW31e-69LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A059DAN81e-114A0A059DAN8_EUCGR; Uncharacterized protein
STRINGXP_010045372.11e-115(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-55LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]