PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054658.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 173aa    MW: 19200.1 Da    PI: 8.0395
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054658.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.5e-40111101100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                   +CaaCk+l+rkC++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++la +
  EcC054658.40  11 SCAACKLLKRKCTSTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIA 107
                   6*********************************************************************************************999 PP

        DUF260  98 kee 100
                   +++
  EcC054658.40 108 RAR 110
                   875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.30310111IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3911108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0006869Biological Processlipid transport
GO:0006886Biological Processintracellular protein transport
GO:0009553Biological Processembryo sac development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010252Biological Processauxin homeostasis
GO:0016192Biological Processvesicle-mediated transport
GO:0048481Biological Processplant ovule development
GO:0005680Cellular Componentanaphase-promoting complex
GO:0016021Cellular Componentintegral component of membrane
GO:0030130Cellular Componentclathrin coat of trans-Golgi network vesicle
GO:0030132Cellular Componentclathrin coat of coated pit
GO:0004672Molecular Functionprotein kinase activity
GO:0005198Molecular Functionstructural molecule activity
GO:0005319Molecular Functionlipid transporter activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0016791Molecular Functionphosphatase activity
GO:0043169Molecular Functioncation binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKGHEPRSSS SCAACKLLKR KCTSTCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILVEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMLEL QHDLAIARAR LARYTVPAVS  120
TSSPSVLMDE NVGMVSFYDM PCCSGVNESF GQSSSQLTQV QPMNDFGQFP YIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4661146114LOB family transfactor Ramosa2.1
5ly0_B3e-4661146114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067553.11e-128PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL83e-66LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A059BI251e-126A0A059BI25_EUCGR; Uncharacterized protein
STRINGXP_010067552.11e-127(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-66LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]