PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054619.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-X1
Protein Properties Length: 1120aa    MW: 121443 Da    PI: 7.7003
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054619.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.93.7e-07310328119
      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                   CG+H+C+++CH GpC+pC+
  EcC054619.90 310 CGRHRCKQICHVGPCDPCQ 328
                   ******************6 PP
2zf-NF-X118.44.7e-06374391118
      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                   CG+H C k CH+GpC++C
  EcC054619.90 374 CGNHMCDKFCHPGPCGEC 391
                   ****************** PP
3zf-NF-X118.64.1e-06526544119
      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                   CG+H+C++lCH G CppC 
  EcC054619.90 526 CGQHSCESLCHSGHCPPCL 544
                   ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.71E-7133203No hitNo description
PROSITE profilePS500168.92140201IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590143198IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.642143199IPR001841Zinc finger, RING-type
CDDcd060081.08E-5232293No hitNo description
SMARTSM004380.29255273IPR000967Zinc finger, NF-X1-type
PfamPF014228.4257272IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-10300348No hitNo description
SMARTSM004382.7E-4310329IPR000967Zinc finger, NF-X1-type
PfamPF014227.9E-6310327IPR000967Zinc finger, NF-X1-type
CDDcd060085.87E-8364406No hitNo description
SMARTSM004380.0084374393IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-4374391IPR000967Zinc finger, NF-X1-type
CDDcd060084.65E-13422470No hitNo description
SMARTSM004381.6E-4432451IPR000967Zinc finger, NF-X1-type
PfamPF014223.4E-4432449IPR000967Zinc finger, NF-X1-type
CDDcd060081.52E-4478537No hitNo description
SMARTSM00438170488518IPR000967Zinc finger, NF-X1-type
PfamPF0142218488499IPR000967Zinc finger, NF-X1-type
CDDcd060084.07E-9516559No hitNo description
SMARTSM004382.0E-4526545IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4526543IPR000967Zinc finger, NF-X1-type
CDDcd060087.06E-6573621No hitNo description
SMARTSM004380.046583601IPR000967Zinc finger, NF-X1-type
PfamPF0142235583600IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3636667IPR000967Zinc finger, NF-X1-type
PfamPF014220.52636651IPR000967Zinc finger, NF-X1-type
CDDcd060086.58E-5665714No hitNo description
PfamPF0142214669695IPR000967Zinc finger, NF-X1-type
SMARTSM004382.4676697IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3308.8E-5915966IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006071Biological Processglycerol metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007186Biological ProcessG-protein coupled receptor signaling pathway
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0003993Molecular Functionacid phosphatase activity
GO:0004371Molecular Functionglycerone kinase activity
GO:0004871Molecular Functionsignal transducer activity
GO:0005509Molecular Functioncalcium ion binding
GO:0005524Molecular FunctionATP binding
GO:0005544Molecular Functioncalcium-dependent phospholipid binding
GO:0008270Molecular Functionzinc ion binding
GO:0019001Molecular Functionguanyl nucleotide binding
GO:0031683Molecular FunctionG-protein beta/gamma-subunit complex binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MNHHARNNRR PRMPAQSARQ EWVPRGSVPN GPSANPPAPA NLNPSSDDGN FPSDSGHASS  60
FRTFPPDGGH RGNLHGNNGF ANHSSGPRGN HGPRGHPARP LNQRREKEKG RSEFSGDRVS  120
NDPNLPQLVQ EIQEKLMKGT VECMICYDMV RRSAPIWSCS SCYSIFHLNC IKKWARAPTS  180
VDLSAEKNQG DNWRCPGCQH VQLTSSKEIR YMCFCGKRTD PPSDLYLTPH SCGEPCGKPL  240
EKDILQPGEK EEDFCPHLCV LQCHPGPCPP CKAFAPPRLC PCGKETITTR CSDRRSVLTC  300
GKCCDKLLEC GRHRCKQICH VGPCDPCQVL LNASCFCRKN IEVVLCGDMA MKGEVDVESG  360
VFSCNSTCEK LLSCGNHMCD KFCHPGPCGE CDLLPGRIRT CYCGKMNLMD ERQNCLDPIP  420
TCSQVCDKLL PCGTHFCAEM CHAGICPPCL ENVAQKCRCG LTSRTVECHR TREEIFTCDK  480
PCGRKKNCGR HRCSERCCPL SNSSNLPLGD WDPHLCSMVC GKKLRCGQHS CESLCHSGHC  540
PPCLETIFTD LTCACGRTSI PPPLPCGTPP PSCQLPCLIP QPCGHSSTHS CHFGDCPPCS  600
VPVAKECIGG HVVLRNIPCG SKDIRCNKPC GKTRQCGLHA CGRTCHPPPC DSDNSASETS  660
LKVSCGQVCG APRRDCRHTC KAPCHPSASC PDARCDSPVT ITCSCGRITA SVPCDAGGAN  720
GNFSTDTVFE ASIMQKLPVP LQPVEATGKR IPLGQRKLVC DDDCAKVERK RVLADAFDIN  780
PPNLETLHFG EHSYVSESVV DLFRRDSKWV LAVEERCKFL VLGKGRGSAT SLKVHVFCPM  840
LKEKRDAVRL IAERWKLVVS AAGWEPKRFI VLHATSKSKV PARVLGGRGS ITSNVPHPPT  900
FDPLVDMDPR LVVSFLDLPR EADISALVLR FGGECELVWL NDKNALAVFS DPARAATALR  960
RLDHGTAYYG AVVLQNGSAA SSLTMPNAWG GAGPAKEGAS IGAIKGNPWK RAVVQEVSDW  1020
KEDSWGGEGW SIDSQSSILK EKEAPISASV NRWSVLDSEN ATSSSAPLVG KEINSIKFED  1080
QAVVGPESKA GGSSSEGTQG LVSSGVEATD VVDDWEEACE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069436.10.0PREDICTED: LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A059AWH80.0A0A059AWH8_EUCGR; Uncharacterized protein
STRINGXP_010069436.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1