PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054617.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 121aa    MW: 13635.7 Da    PI: 8.3862
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054617.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS81.71.3e-251120256373
          GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg... 348
                   r+  al yy +l++s+e+++ r   er++ E+  l+r++ n vac+g++r+er+e +++Wr+ +++aGF+  pl+ ++a++  +  ++ +       
  EcC054617.20   1 RVGVALAYYGTLLESIESGVVRRLLERVWAEEG-LRRKLGNSVACKGRDRVERCEVFGEWRACMGMAGFQLKPLGRHMADSLTASFHRLEwA-Cdpr 95 
                   56679****************************.*******************************************999998888877742.2245 PP

          GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373
                   ++v ee+g +++gW +r+L+++SaW
  EcC054617.20  96 FTVTEENGVVCFGWCGRTLTVASAW 120
                   ************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.024198IPR005202Transcription factor GRAS
PfamPF035144.4E-231120IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
RVGVALAYYG TLLESIESGV VRRLLERVWA EEGLRRKLGN SVACKGRDRV ERCEVFGEWR  60
ACMGMAGFQL KPLGRHMADS LTASFHRLEW ACDPRFTVTE ENGVVCFGWC GRTLTVASAW  120
H
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060571.17e-50PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-37SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DIP42e-48A0A059DIP4_EUCGR; Uncharacterized protein
STRINGXP_010060571.13e-49(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.16e-40SCARECROW-like 8