PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054609.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 438aa    MW: 48033.2 Da    PI: 6.8316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054609.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08348389955
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR++i +++  L+ l+P        K++ a++L +A  Y+k Lq
  EcC054609.50 348 ARQRREKISERIRVLQMLVPGG-----SKMDTASMLDEAASYLKFLQ 389
                   69******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-11330393No hitNo description
PROSITE profilePS5088814.939339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13345398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5348389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006002Biological Processfructose 6-phosphate metabolic process
GO:0006096Biological Processglycolytic process
GO:0006359Biological Processregulation of transcription from RNA polymerase III promoter
GO:0006508Biological Processproteolysis
GO:0019310Biological Processinositol catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0016020Cellular Componentmembrane
GO:0003723Molecular FunctionRNA binding
GO:0003872Molecular Function6-phosphofructokinase activity
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005506Molecular Functioniron ion binding
GO:0005524Molecular FunctionATP binding
GO:0008375Molecular Functionacetylglucosaminyltransferase activity
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046983Molecular Functionprotein dimerization activity
GO:0050113Molecular Functioninositol oxygenase activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDFGWPRSV QVADNLTSLW SINQQQNNNG SFNTKSKSNS CGFSGGGNTD HHHHLLVELA  60
GTFKNNSDNI ELQKVKQIAN SSPEIMPHPV APPMMEEAMG VFSNSAVELS PCLVSNFCSM  120
NTFTAAPPIA KNVGVSSEFD CFLSGTNHNT IDADTSIEED SIVSNVIFSE SGSFWSNFAN  180
TSSARTAVST GESDHMHHHP SHEANMASGH TSADKAANGT TSFFSKRKNV NFGNMNNLFE  240
PDSHAGGGFK LVSEVPSRPN KRPRSQKQIF TTPTTSSSSK NINFQQQPSS SGSYSSVDQE  300
PDPEVIAQMK EMIYQAAAFR PVNLGFEAVE KPRRKNVRIS SDPQTVAARQ RREKISERIR  360
VLQMLVPGGS KMDTASMLDE AASYLKFLQS QVKALESFAK DNNNSFAFSS LPFGHSFVPM  420
QSHHHDLQNP FVNPFHPH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329335EKPRRKN
2330335KPRRKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062567.10.0PREDICTED: transcription factor bHLH87
RefseqXP_018731657.10.0PREDICTED: transcription factor bHLH87
TrEMBLA0A059BUM90.0A0A059BUM9_EUCGR; Uncharacterized protein
STRINGXP_010062567.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-64bHLH family protein