PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054588.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 866aa    MW: 96311.1 Da    PI: 6.5107
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054588.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.8e-24128229199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  EcC054588.50 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKN 220
                   99*****************************8544444..48************************************************..88999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  EcC054588.50 221 QLLLGIRRA 229
                   99****997 PP

2Auxin_resp121.18.3e-40254337183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  EcC054588.50 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 337
                   79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-49113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-21127228No hitNo description
SMARTSM010191.8E-24128230IPR003340B3 DNA binding domain
PfamPF023624.9E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548128230IPR003340B3 DNA binding domain
PfamPF065071.7E-34254337IPR010525Auxin response factor
PfamPF023091.9E-7753850IPR033389AUX/IAA domain
SuperFamilySSF542773.4E-8754836No hitNo description
PROSITE profilePS5174526.283762847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MRLSSSGFNH QSPEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPN LSPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDL YLLPAELGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWQN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS GLPSFHALRD GDMSISSSLM WLQGVGDQGV QSLNFQGFGM  420
TPWLQPRYDT SMAALQTDVY QAMASAALQD MRAVDPSKCA SQSLLPLQQS QNVPMGQASI  480
IQRQMLQQSQ SQNTLLQGFQ ENQATAQGQV LQHPSYNDQR QQQQQHQQQP QQSQQFNHTS  540
LQQQMPNIIT TLPQYGSIGQ SQSSSLPAIS QSQQNIFSDG MENPIVASDV SPMQSILGSI  600
SRDGASQLLS VNGSDSMISS SLLKKQNSVE PHLLSEAAHC ILPQVEQLST THTNVSEFAN  660
YLPPFPGREY SAYPGATDPQ SSLLFGVNID STSLMMQNGM QHLRNIGSEH DSLSVPFGTS  720
NFASVAGTEF PHNSDMATSS CVDESGFLQS SENVDQVNPP TRTFVKVHKS GTFGRSLDIS  780
KFSSYDELRS ELARMFGLEG QLEDPQRSGW QLVFVDREND ILLLGDDPWQ EFVNNVWYIK  840
ILSPHEVKQL GKQGINPANS VPRQAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054260.20.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9S1H80.0W9S1H8_9ROSA; Multifunctional fusion protein
STRINGXP_010054260.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]