PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054573.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 472aa    MW: 53242.2 Da    PI: 8.889
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054573.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06441463225
                   -S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                   k  +Cr+f + G C +Gd+CkF H
  EcC054573.10 441 KPQRCRYFEQ-GRCYFGDKCKFLH 463
                   6679**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689063.11E-8105150No hitNo description
Gene3DG3DSA:1.10.720.306.4E-10105150IPR003034SAP domain
PfamPF020374.9E-11115149IPR003034SAP domain
PROSITE profilePS5080010.386115149IPR003034SAP domain
SMARTSM005138.6E-5115149IPR003034SAP domain
Gene3DG3DSA:4.10.1000.101.7E-7438467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826439466IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-5439465IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6440464IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MATSELHAAS TGYQISDTDE EDEACCSDSD SDYDPDGSDG DGDGDRDGGG GVPDDAHSQF  60
SELSIKNTAK SRARKDVDRS DDAAQPRLEA SFMEIDEEED ESAATVLSLV HAGQLEKLKV  120
EQCKAYLRKN GLRLTGNKET LIQRIKEHIE IFTGKGEEKY PVSSFVLRCK GDACTGDVVM  180
FEQNVYELFN IASRSASGPP CGKRIVAGRI VKESYGAAKQ QHTFTIEVLW SKGEKPLRPL  240
HPLLIKGRNL YRYNTMRQRW EDEGERAKAL MEKHARGSLA RSDREARLQD KERRKLKKES  300
RTSRKQNIKK NGAQKISIST SKTGNDAGQL RGSSIASIGQ PIVRPIQMSS TENHRSRDQF  360
QEKRGDPQNR GKSLSFMNTT KHELPHSRDD ANLGNQRPNH NFSNINGAVQ VPHWLHERQP  420
LAIVNQHPRN FMGRAEQGRR KPQRCRYFEQ GRCYFGDKCK FLHEHGERGQ SF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061855.10.0PREDICTED: zinc finger CCCH domain-containing protein 62
TrEMBLA0A059BRK20.0A0A059BRK2_EUCGR; Uncharacterized protein
STRINGXP_010061855.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM829434