PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054566.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TALE | ||||||||
Protein Properties | Length: 384aa MW: 43702.3 Da PI: 6.7246 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 311 | 346 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ EcC054566.30 311 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 346 4679*****************************885 PP | |||||||
2 | ELK | 37.8 | 4e-13 | 266 | 287 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s EcC054566.30 266 ELKNHLLRKYSGYLSSLKQELS 287 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.7E-21 | 121 | 165 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-22 | 122 | 164 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.5E-26 | 172 | 223 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.3E-23 | 177 | 221 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.7E-10 | 266 | 287 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 266 | 286 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 266 | 287 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.005 | 286 | 349 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-20 | 287 | 362 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.8E-13 | 288 | 353 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 291 | 352 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.16E-12 | 298 | 350 | No hit | No description |
Pfam | PF05920 | 1.5E-16 | 306 | 345 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 324 | 347 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009081 | Biological Process | branched-chain amino acid metabolic process | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0004084 | Molecular Function | branched-chain-amino-acid transaminase activity | ||||
GO:0031176 | Molecular Function | endo-1,4-beta-xylanase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MEEYGQMNEN SSTGSRGNNS FLYASPVLGP SSSGNSNYGR GNSSGGHFYS QSGDHCFQSE 60 APPHPVVKTE ATTSHHGHAQ KFHHYSLVRD HHDPSASHHH HHQHHQHQQL QTVSESSREV 120 DAMKAKIIAH PQYSNLLEAY MDCQKVGAPP EVVAKLSVAR QEFESRQRSS VASADGSKDP 180 ELDQFMEAYY DMLVKYRDEL TRPLQEAMDF MRRIETQLNL LSNNGPVRVF NSDEKCEGVG 240 SSEEDQDNSG GETELPEIDP RAEDRELKNH LLRKYSGYLS SLKQELSKKK KKGKLPKEAR 300 QKLLSWWELH YKWPYPSETE KVALAESTGL DQKQINNWFI NQRKRHWKPS EDMQFMVMDG 360 LHPQGAALYM DGHYIGDGPY RLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059832.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Refseq | XP_010059833.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 0.0 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A059BKP2 | 0.0 | A0A059BKP2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059832.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-142 | KNOTTED-like from Arabidopsis thaliana |