PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054522.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 111aa MW: 12336.1 Da PI: 7.8517 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.7 | 3.4e-42 | 1 | 97 | 2 | 98 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 CaaCk+lrr+C +dC +apyfpa++p+kf nvhk+FGasnv k+l++lpe++r +++sslvyeA+ar+rdPv+G+vg i++lq+ql+ + ae+++l+ EcC054522.20 1 CAACKLLRRRCMQDCLFAPYFPASEPHKFTNVHKVFGASNVNKMLQDLPEDQRANTVSSLVYEANARVRDPVNGCVGEITALQSQLADKIAEVERLQ 97 ****************************************************************************************999998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.954 | 1 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-41 | 1 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016757 | Molecular Function | transferase activity, transferring glycosyl groups |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
CAACKLLRRR CMQDCLFAPY FPASEPHKFT NVHKVFGASN VNKMLQDLPE DQRANTVSSL 60 VYEANARVRD PVNGCVGEIT ALQSQLADKI AEVERLQVLL EAEKSNRSPS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 1 | 105 | 12 | 109 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 1 | 105 | 12 | 109 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056712.1 | 6e-78 | PREDICTED: LOB domain-containing protein 4 | ||||
Refseq | XP_010058105.1 | 6e-78 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 9e-46 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A059C5K5 | 1e-76 | A0A059C5K5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056712.1 | 2e-77 | (Eucalyptus grandis) | ||||
STRING | XP_010058105.1 | 2e-77 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-48 | LOB domain-containing protein 4 |