PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054515.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 290aa    MW: 31964.2 Da    PI: 5.5984
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054515.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC591e-186861898
          NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                   ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl +iv r
  EcC054515.120  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSR 86
                   5789*************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-26372IPR009072Histone-fold
SuperFamilySSF471134.37E-20490IPR009072Histone-fold
PfamPF008082.2E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016567Biological Processprotein ubiquitination
GO:0032940Biological Processsecretion by cell
GO:0045324Biological Processlate endosome to vacuole transport
GO:0048589Biological Processdevelopmental growth
GO:0051726Biological Processregulation of cell cycle
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005769Cellular Componentearly endosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0004672Molecular Functionprotein kinase activity
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0043621Molecular Functionprotein self-association
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSLHLKHC VQSYNVFDFL REIVSRVPDY GHGHGHGHSD AVSEDRTVSR RRKATIDDGN  120
DTDEESKKSR MLEMAHTGSS GRGRGRGRGR GRGRGGRATE RETAHHETES SEPTTSLQPV  180
NKNIVNQGTV SDHSCEPKKT AEETITATDG SKLGAHGFDL NTQVTENEGT PAKVPAAGVS  240
SEEPNVDEAK HEEYPGWSLS EVDKMSIDPL QLANLGTRID EDDEDYDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143153RGRGRGRGRGR
2145154RGRGRGRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733368.10.0PREDICTED: dr1-associated corepressor
TrEMBLA0A218X0Z51e-120A0A218X0Z5_PUNGR; Uncharacterized protein
STRINGXP_010067677.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-72nuclear factor Y, subunit C11