PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC054488.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 310aa MW: 33876.4 Da PI: 6.9963 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.9e-33 | 43 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl EcC054488.40 43 KPRLRWTTDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.175 | 40 | 100 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-32 | 40 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 43 | 98 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.67E-16 | 43 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-7 | 45 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-14 | 138 | 183 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010071 | Biological Process | root meristem specification | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0019464 | Biological Process | glycine decarboxylation via glycine cleavage system | ||||
GO:0031087 | Biological Process | deadenylation-independent decapping of nuclear-transcribed mRNA | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0000932 | Cellular Component | cytoplasmic mRNA processing body | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005960 | Cellular Component | glycine cleavage complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0005506 | Molecular Function | iron ion binding | ||||
GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | ||||
GO:0020037 | Molecular Function | heme binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MFPRLIQPHE GLIGHPDDFV GGGGGGGPGH RGDPCLVLTS DPKPRLRWTT DLHERFVDAV 60 TQLGGASKAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKEGADAPK DGSYLLENPG 120 SGNSTPSLPS SDLNENYEVK EALRAQMEMQ SKLHLQVEAE KHLQIRQEAE RRYMAMLERA 180 CKMLADQFIT SAIIDNENQK CQAYGVRMPR NPSIDPLGFY THEVAAVHGT EDDLPPSLHS 240 QRGDCSTESC LTSHESPRIL ALEESPAGGK KRPMGIDSTS APLIWSEAKL KIQDVAVPQV 300 SPHGLTGFGM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 43 | 99 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018729137.1 | 0.0 | PREDICTED: uncharacterized protein LOC104447696 | ||||
TrEMBL | A0A059CB78 | 1e-178 | A0A059CB78_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059710.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24120.1 | 2e-65 | G2-like family protein |