PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054471.80 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 40390.6 Da PI: 9.0999 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.4 | 1.6e-54 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrFhPtdeelvv+yLkkk+++++l++ +vi+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk+vls+ + EcC054471.80 16 LPPGFRFHPTDEELVVHYLKKKAASSPLPV-SVIAEVDIYKFDPWELPAKATYGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDKPVLSAvG 111 79****************************.99***************8888899**************************************9988 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kk Lvfy g+ pkg+kt+W+mheyrl EcC054471.80 112 HQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-65 | 9 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.051 | 16 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000413 | Biological Process | protein peptidyl-prolyl isomerization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006457 | Biological Process | protein folding | ||||
GO:0009535 | Cellular Component | chloroplast thylakoid membrane | ||||
GO:0009543 | Cellular Component | chloroplast thylakoid lumen | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003755 | Molecular Function | peptidyl-prolyl cis-trans isomerase activity | ||||
GO:0008168 | Molecular Function | methyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MESTDSSAGS AAQPHLPPGF RFHPTDEELV VHYLKKKAAS SPLPVSVIAE VDIYKFDPWE 60 LPAKATYGEQ EWYFFTPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSAV GHQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRLIENKVSN RPPGCDVGNK KNSLRLDDWV LCRIYKKSNV 180 HRPMDHERDD SMEDMLESIP PSLTMNPHSM KLHLSKPSTT SYGALFEHEQ NLFDGMMGAS 240 GGGGIPGNVM SHLASSSGLK PELAMVQPPN ISSPLPLKRT LHSLYWNDKD VATETSDPSS 300 VKRQFSADRN DPGSVERNNN GGTSSIASLL GQIPQTPPLH QQTAYGPLGD GGFRPQFHMP 360 GLNWYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-73 | 12 | 179 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-73 | 12 | 179 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-73 | 12 | 179 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-73 | 12 | 179 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-73 | 12 | 179 | 16 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-73 | 12 | 179 | 13 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-73 | 12 | 179 | 13 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060527.1 | 0.0 | PREDICTED: NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-123 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A059BMH4 | 0.0 | A0A059BMH4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060527.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-123 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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