PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054434.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Dof | ||||||||
Protein Properties | Length: 304aa MW: 32607.2 Da PI: 8.57 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.8 | 1.3e-39 | 45 | 106 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrn+PvGgg+rknk+sss EcC054434.30 45 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNIPVGGGSRKNKRSSS 106 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 39 | 97 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-33 | 47 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.04 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015743 | Biological Process | malate transport | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDTAQWPQEI VVKPIEDIVT STCTAAATPK PSSSSVSERK PRPQKEQALN CPRCNSTNTK 60 FCYYNNYSLT QPRYFCKTCR RYWTDGGSLR NIPVGGGSRK NKRSSSSASS SSSSFNSSSK 120 KLPDLISTPA SNPNNKVTLH EGQDLNLAFS NPHLHDFKSI SELVQVPSLE ASKNHQISAN 180 SSSAGASVAP PQLSALELLS GITSRGSFSS FMSMPVHDPG SVYTPGLFAL PDFKPTLNFS 240 LDGLGSGGYR SLPSVQEGGT NGGRLLFPFE DLKPVSSTSD MEQNRGDQGD SNGYWSGMLG 300 GGSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053092.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.8 | ||||
Swissprot | Q8LAP8 | 4e-70 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A059CG34 | 0.0 | A0A059CG34_EUCGR; Uncharacterized protein | ||||
STRING | XP_010053092.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 4e-58 | Dof family protein |
Publications ? help Back to Top | |||
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