PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054434.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Dof
Protein Properties Length: 304aa    MW: 32607.2 Da    PI: 8.57
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054434.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-3945106263
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                   ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrn+PvGgg+rknk+sss
  EcC054434.30  45 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNIPVGGGSRKNKRSSS 106
                   7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-273997IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3347103IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0449103IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015743Biological Processmalate transport
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPIEDIVT STCTAAATPK PSSSSVSERK PRPQKEQALN CPRCNSTNTK  60
FCYYNNYSLT QPRYFCKTCR RYWTDGGSLR NIPVGGGSRK NKRSSSSASS SSSSFNSSSK  120
KLPDLISTPA SNPNNKVTLH EGQDLNLAFS NPHLHDFKSI SELVQVPSLE ASKNHQISAN  180
SSSAGASVAP PQLSALELLS GITSRGSFSS FMSMPVHDPG SVYTPGLFAL PDFKPTLNFS  240
LDGLGSGGYR SLPSVQEGGT NGGRLLFPFE DLKPVSSTSD MEQNRGDQGD SNGYWSGMLG  300
GGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053092.10.0PREDICTED: dof zinc finger protein DOF1.8
SwissprotQ8LAP84e-70DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A059CG340.0A0A059CG34_EUCGR; Uncharacterized protein
STRINGXP_010053092.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-58Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]