PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054390.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 96aa    MW: 11300.3 Da    PI: 10.9515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054390.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.7e-119771586
                  -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                  ++ +p +fa++h    + ++++tl+    s rsW +kl+      r+++++GW  F+++ +L++g   vF+l++
  EcC054390.20  9 LMAFPGQFARQHirR-N-KKERTLR---YSDRSWPIKLSRYMLEIRVFFSAGWPAFARETHLCVGNARVFELID 77
                  5789********643.3.2334555...577*******66666666*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.46196IPR003340B3 DNA binding domain
CDDcd100171.53E-8485No hitNo description
SuperFamilySSF1019362.75E-10885IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-8977IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-12986IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
CFLHCRLTLM AFPGQFARQH IRRNKKERTL RYSDRSWPIK LSRYMLEIRV FFSAGWPAFA  60
RETHLCVGNA RVFELIDIVF KISIFGDGGK GRIHVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065666.13e-36PREDICTED: B3 domain-containing transcription factor VRN1 isoform X6
TrEMBLA0A059BAW71e-33A0A059BAW7_EUCGR; Uncharacterized protein
STRINGXP_010065661.16e-34(Eucalyptus grandis)