PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054339.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 734aa MW: 80615.9 Da PI: 6.561

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054339.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	309.6	7.4e-95	385	734	3	367
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 e+L++++e +++g+ laq +Larl+++ sp g+p++R+a+y++eAL+ l+ +++ +p + s+ + + ++ a+k fse+sP+l+f+++t+N EcC054339.60 385 EQLYKAVELIETGNSVLAQGILARLNHQLSPIGKPFHRAAFYVKEALQLLLHA--NSTN---HPPAFSPFSLIYKIGAFKSFSEISPVLQFANFTCN 476 79************************************************9..4444...555555556********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.. 194 qa lea+eg ervHii fdi++G+QW++L+q+La R++g+psl+iT+++sp+++++ el t+e+L++fA+e++v +ef+v+ ++l++ ++ L EcC054339.60 477 QAFLEALEGFERVHIISFDIGYGGQWASLIQELALRNGGAPSLKITAFASPTTHDEVELTLTQENLKHFANEINVALEFEVINIEALSST-PWPLpl 572 *****************************************************************************977777665.676622 PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +v gE++aVnl + ++ + +s + L++vk+lsPk+v ++ +d+++ +F +++++al+++s+l++sl+a p + e +k+E+ +l+ EcC054339.60 573 NVPDGEVIAVNLPIGSFSAH------PSFLPLALRFVKQLSPKIVMSLDRSCDRTDVPFPQQVVHALDCHSSLLESLDAV-PVNLEVLQKIEKYFLQ 662 6666******888887......4555679****************************************998.9999******** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 + i+++++ +++ e+ W++ + ++GF+p+++s+++++qa++ll++++++g++ve++++slvl+W++++L EcC054339.60 663 PGIEKIIMGRHRT----PERTVPWKSLFLSSGFSPLTFSNFNESQAEYLLQRTAVRGFHVEKRQHSLVLCWQRKEL 734 ****99998....89999*************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.158	357	721	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-92	385	734	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MKATPLPFEE LQRKGVVLDF SASSDSSPQH HHHHRQQHHR HHSLQQQEQQ LQQQKWSSGE 60 TPRSKLGNFY VGSEKSSFLE IRRSPSPQPS STLSSSLNSG GGGGGASTDT TGCAAAAGAA 120 ASSNNTPQGA LAKCGMGVED WEGVLPENSQ EQSILRMIMG DIEDPSMGLS KLLQGTGGSQ 180 ELEFSAGFGV LDPGFGFEPV TSTNLNIETS LHDSGSDFAL GAQNLHGNNV RAPSVSNPIP 240 FFNSAANNAT VPALPPGVFQ QHHNESLDEK PMIFNPQAII NHNQAQFPSN PSFFLPPGHA 300 QMQDHHLLLP PPPKRLNPGS IEPNYSGPGT GLLDSGQDLF ARRQQHQQLQ LHPQQFQQRP 360 VAAVMKQKMV NEDIVTQQLQ QAIAEQLYKA VELIETGNSV LAQGILARLN HQLSPIGKPF 420 HRAAFYVKEA LQLLLHANST NHPPAFSPFS LIYKIGAFKS FSEISPVLQF ANFTCNQAFL 480 EALEGFERVH IISFDIGYGG QWASLIQELA LRNGGAPSLK ITAFASPTTH DEVELTLTQE 540 NLKHFANEIN VALEFEVINI EALSSTPWPL PLNVPDGEVI AVNLPIGSFS AHPSFLPLAL 600 RFVKQLSPKI VMSLDRSCDR TDVPFPQQVV HALDCHSSLL ESLDAVPVNL EVLQKIEKYF 660 LQPGIEKIIM GRHRTPERTV PWKSLFLSSG FSPLTFSNFN ESQAEYLLQR TAVRGFHVEK 720 RQHSLVLCWQ RKEL

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MKATPLPFEE LQRKGVVLDF SASSDSSPQH HHHHRQQHHR HHSLQQQEQQ LQQQKWSSGE  60
TPRSKLGNFY VGSEKSSFLE IRRSPSPQPS STLSSSLNSG GGGGGASTDT TGCAAAAGAA  120
ASSNNTPQGA LAKCGMGVED WEGVLPENSQ EQSILRMIMG DIEDPSMGLS KLLQGTGGSQ  180
ELEFSAGFGV LDPGFGFEPV TSTNLNIETS LHDSGSDFAL GAQNLHGNNV RAPSVSNPIP  240
FFNSAANNAT VPALPPGVFQ QHHNESLDEK PMIFNPQAII NHNQAQFPSN PSFFLPPGHA  300
QMQDHHLLLP PPPKRLNPGS IEPNYSGPGT GLLDSGQDLF ARRQQHQQLQ LHPQQFQQRP  360
VAAVMKQKMV NEDIVTQQLQ QAIAEQLYKA VELIETGNSV LAQGILARLN HQLSPIGKPF  420
HRAAFYVKEA LQLLLHANST NHPPAFSPFS LIYKIGAFKS FSEISPVLQF ANFTCNQAFL  480
EALEGFERVH IISFDIGYGG QWASLIQELA LRNGGAPSLK ITAFASPTTH DEVELTLTQE  540
NLKHFANEIN VALEFEVINI EALSSTPWPL PLNVPDGEVI AVNLPIGSFS AHPSFLPLAL  600
RFVKQLSPKI VMSLDRSCDR TDVPFPQQVV HALDCHSSLL ESLDAVPVNL EVLQKIEKYF  660
LQPGIEKIIM GRHRTPERTV PWKSLFLSSG FSPLTFSNFN ESQAEYLLQR TAVRGFHVEK  720
RQHSLVLCWQ RKEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-26	401	734	21	368	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056373.1	0.0	PREDICTED: scarecrow-like protein 6
Swissprot	O81316	1e-138	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A059C4A3	0.0	A0A059C4A3_EUCGR; Uncharacterized protein
STRING	XP_010056373.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8574	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-141	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]