PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054339.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 729aa MW: 79806.7 Da PI: 6.6099

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054339.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	329.4	7e-101	372	728	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 v++L++++e +++g+ elaq +Larl+++ sp g+p+ R+a+y++eAL+ l+ ++ +p + s+ + + ++ a+k fsevsP+l+f+++t+ EcC054339.50 372 VDQLYKAVELIEAGNPELAQGILARLNHQLSPIGKPFIRAAFYVKEALQLLLQT------NSTNPLAFSPFSLIYKIGAYKSFSEVSPVLQFANFTC 462 789************************************************9......555666666666********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeL 194 Nqa lea+eg +rvHi+ fd+++G+QW++L+q+La R++g+ sl+iT+++sp +++ el t+e+L++fA+el++ +ef+v+ ++l++ +e L EcC054339.50 463 NQAFLEALEGYDRVHILSFDVGYGGQWASLMQELALRNKGSRSLKITAFASPMIHDELELGLTQENLKHFANELNIYVEFEVVNIEALNSSsWPEPL 559 *******************************************************************************97777766525899 PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +++ gEa+aVnl ++ ++++ +s ++vL+++k+lsPk+vv ++ +d+ +++F +++++al+ ys+l++sl+a + + ++k+Er +l+ EcC054339.50 560 NIRDGEAIAVNLPIASFSTH------PSILPSVLRFIKQLSPKIVVSLDRSCDRIDAPFPQHVVQALNSYSSLLESLDAL-NVNFDVMQKIERYFLQ 649 ************999887......334457*****************************************876.4567******** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + i++++ ++++ e+ ++Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve++++slvl+W++++L+svSaWr EcC054339.50 650 PGIEKIIRGRHRS----PEKTHSWRSLFLSSGFSPLAFSNFNESQAECLVQRTPVRGFHVEKRQHSLVLCWQRKELLSVSAWR 728 ***998888....9999***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.169	345	708	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-98	372	728	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MKATPLGVVL GFSAATDSSL KDHQHHRHHH QEEHQKWLSA ETPSSKLGNF FVGSEKSSLL 60 DIRRSLSPQP SSTLSSSLNS SGCAGASTDT TGAAGAAAAA ASGNNTPRGG ASGKCGMGAE 120 DWEAVLPENG QEQSIMRMIM GDIEDPSVGL SKLLQGTGGS QELAFGAGFG ELDQGFSFEP 180 MTGSNLNSEA SLHDCGSDFP LGGSNVHGNN VRIPSVSNPI PFPGQRKPNS FSSSSANNAL 240 VPALPLGVFQ LQQDGSLDEK PMVFDPQAIV NQNQATYPQN PSFFVPLGHT QMQDHDLLSA 300 PPPKRQNSGP GGPNYSSSRT GLVNSGQDTF VRHQEQYHFH PQQFQTQRPV PAAMKQKMSD 360 ELPNHQVQQA IVDQLYKAVE LIEAGNPELA QGILARLNHQ LSPIGKPFIR AAFYVKEALQ 420 LLLQTNSTNP LAFSPFSLIY KIGAYKSFSE VSPVLQFANF TCNQAFLEAL EGYDRVHILS 480 FDVGYGGQWA SLMQELALRN KGSRSLKITA FASPMIHDEL ELGLTQENLK HFANELNIYV 540 EFEVVNIEAL NSSSWPEPLN IRDGEAIAVN LPIASFSTHP SILPSVLRFI KQLSPKIVVS 600 LDRSCDRIDA PFPQHVVQAL NSYSSLLESL DALNVNFDVM QKIERYFLQP GIEKIIRGRH 660 RSPEKTHSWR SLFLSSGFSP LAFSNFNESQ AECLVQRTPV RGFHVEKRQH SLVLCWQRKE 720 LLSVSAWRY

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MKATPLGVVL GFSAATDSSL KDHQHHRHHH QEEHQKWLSA ETPSSKLGNF FVGSEKSSLL  60
DIRRSLSPQP SSTLSSSLNS SGCAGASTDT TGAAGAAAAA ASGNNTPRGG ASGKCGMGAE  120
DWEAVLPENG QEQSIMRMIM GDIEDPSVGL SKLLQGTGGS QELAFGAGFG ELDQGFSFEP  180
MTGSNLNSEA SLHDCGSDFP LGGSNVHGNN VRIPSVSNPI PFPGQRKPNS FSSSSANNAL  240
VPALPLGVFQ LQQDGSLDEK PMVFDPQAIV NQNQATYPQN PSFFVPLGHT QMQDHDLLSA  300
PPPKRQNSGP GGPNYSSSRT GLVNSGQDTF VRHQEQYHFH PQQFQTQRPV PAAMKQKMSD  360
ELPNHQVQQA IVDQLYKAVE LIEAGNPELA QGILARLNHQ LSPIGKPFIR AAFYVKEALQ  420
LLLQTNSTNP LAFSPFSLIY KIGAYKSFSE VSPVLQFANF TCNQAFLEAL EGYDRVHILS  480
FDVGYGGQWA SLMQELALRN KGSRSLKITA FASPMIHDEL ELGLTQENLK HFANELNIYV  540
EFEVVNIEAL NSSSWPEPLN IRDGEAIAVN LPIASFSTHP SILPSVLRFI KQLSPKIVVS  600
LDRSCDRIDA PFPQHVVQAL NSYSSLLESL DALNVNFDVM QKIERYFLQP GIEKIIRGRH  660
RSPEKTHSWR SLFLSSGFSP LAFSNFNESQ AECLVQRTPV RGFHVEKRQH SLVLCWQRKE  720
LLSVSAWRY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-34	384	728	16	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056372.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A059C3M9	0.0	A0A059C3M9_EUCGR; Uncharacterized protein
STRING	XP_010056372.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-143	GRAS family protein