PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054300.90

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

AP2

Protein Properties

Length: 546aa MW: 59805.5 Da PI: 6.8384

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054300.90	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.6	2.3e-11	170	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g EcC054300.90 170 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 226 57*****************5444.2455536655.779999************98 PP
2	AP2	47.1	5.9e-15	271	320	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g EcC054300.90 271 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 320 9*************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.1E-9	170	226	IPR001471	AP2/ERF domain
CDD	cd00018	1.19E-19	170	236	No hit	No description
SuperFamily	SSF54171	7.19E-15	170	236	IPR016177	DNA-binding domain
PROSITE profile	PS51032	17.504	171	234	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-23	171	240	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.3E-12	171	235	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-6	172	183	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.41E-18	269	329	IPR016177	DNA-binding domain
CDD	cd00018	3.33E-24	269	328	No hit	No description
SMART	SM00380	1.6E-32	270	334	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.375	270	328	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.1E-18	270	328	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-9	271	320	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-6	310	330	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0030001	Biological Process	metal ion transport
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0019867	Cellular Component	outer membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003723	Molecular Function	RNA binding
GO:0005507	Molecular Function	copper ion binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043531	Molecular Function	ADP binding
GO:0046873	Molecular Function	metal ion transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MNSNNWLSFP LSPSSHSSLQ PNLHSTQPHQ FSLGLVNENM DNPFHNQEWN MINAHGASGE 60 VPKVADFLGV GKSENQSDLT AFNGMNQAGD ADYLFPSSSL VPVQQSAVVA AATSSNYELQ 120 ENVGNMQSLT LSMGSGSKGS ASEISGDNTS NNTVENAPRR TLDTFGQRTS IYRGVTRHRW 180 TGRYEAHLWD NSCRREGQSR KGRQGGYDKE EKAARAYDLA ALKYWGTSTT TNFPISNYEK 240 ELEEMKHMTR QEFVASIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 300 FSTEEEAAEA YDIAAIKFRG LNAVTNFDMN RYDVKAILES NTLPIGGGAA KRLKEAQALE 360 SSRKREEMIA LTSSFQYGSS SSSRLQSYPL LQPSFDHHHQ PQPLLTLQNP EISHYSQQTD 420 PSFPHNYIQT QLQLHQQYQN HPYYNSTNYL QSNPALLHGL MSVGSSTTVI GENTNNNGSS 480 SGSYSGGYLG MGSSSGGGGG GGGNGVGSEE LAMVKVDYDM PNSGYGSWSA DSVPGSNPGV 540 FTMWND

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MNSNNWLSFP LSPSSHSSLQ PNLHSTQPHQ FSLGLVNENM DNPFHNQEWN MINAHGASGE  60
VPKVADFLGV GKSENQSDLT AFNGMNQAGD ADYLFPSSSL VPVQQSAVVA AATSSNYELQ  120
ENVGNMQSLT LSMGSGSKGS ASEISGDNTS NNTVENAPRR TLDTFGQRTS IYRGVTRHRW  180
TGRYEAHLWD NSCRREGQSR KGRQGGYDKE EKAARAYDLA ALKYWGTSTT TNFPISNYEK  240
ELEEMKHMTR QEFVASIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  300
FSTEEEAAEA YDIAAIKFRG LNAVTNFDMN RYDVKAILES NTLPIGGGAA KRLKEAQALE  360
SSRKREEMIA LTSSFQYGSS SSSRLQSYPL LQPSFDHHHQ PQPLLTLQNP EISHYSQQTD  420
PSFPHNYIQT QLQLHQQYQN HPYYNSTNYL QSNPALLHGL MSVGSSTTVI GENTNNNGSS  480
SGSYSGGYLG MGSSSGGGGG GGGNGVGSEE LAMVKVDYDM PNSGYGSWSA DSVPGSNPGV  540
FTMWND

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269\|PubMed:15454085, ECO:0000269\|PubMed:15635403, ECO:0000269\|PubMed:16424342, ECO:0000269\|PubMed:20190735}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin accumulation. {ECO:0000269\|PubMed:15454085}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031827.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
Swissprot	Q5YGP7	0.0	PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBL	A0A059ABI9	0.0	A0A059ABI9_EUCGR; Uncharacterized protein
STRING	XP_010031827.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lee DK,Sieburth LE The bps signal: embryonic arrest from an auxin-independent mechanism in bypass triple mutants. Plant Signal Behav, 2012. 7(6): p. 698-700 [PMID:22580686] Hong LW,Yan DW,Liu WC,Chen HG,Lu YT TIME FOR COFFEE controls root meristem size by changes in auxin accumulation in Arabidopsis. J. Exp. Bot., 2014. 65(1): p. 275-86 [PMID:24277277] Tian H,Jia Y,Niu T,Yu Q,Ding Z The key players of the primary root growth and development also function in lateral roots in Arabidopsis. Plant Cell Rep., 2014. 33(5): p. 745-53 [PMID:24504658] Zhao Q, et al. Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche. J Integr Plant Biol, 2014. 56(12): p. 1151-63 [PMID:24831283] Huang JB, et al. ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis. Plant Cell, 2014. 26(9): p. 3501-18 [PMID:25217509] Yang S, et al. The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance. Plant Cell, 2015. 27(6): p. 1670-80 [PMID:25991732] Jia Y, et al. The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development. J. Exp. Bot., 2015. 66(15): p. 4631-42 [PMID:25998905] Zhang M, et al. A tetratricopeptide repeat domain-containing protein SSR1 located in mitochondria is involved in root development and auxin polar transport in Arabidopsis. Plant J., 2015. 83(4): p. 582-99 [PMID:26072661] Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902 [PMID:27001831] Ou Y, et al. RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana. Cell Res., 2016. 26(6): p. 686-98 [PMID:27229312] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis . J Integr Plant Biol, 2017. 59(1): p. 30-43 [PMID:28074634] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]