PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054284.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 308aa    MW: 35038.3 Da    PI: 8.344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054284.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16e-52181463128
           NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...k 96 
                   pGfrFhPtdeelv +yL++kv++k++++++ i+++diyk++PwdLpk+ ++++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+   +
  EcC054284.60  18 PGFRFHPTDEELVAFYLRRKVDKKPMKIDHLISQIDIYKYDPWDLPKASDTGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHggeG 114
                   9***************************889***************99999*****************************************96655 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   +e +glkktLv+y+g a kg+ktdW+mhe+rl
  EcC054284.60 115 HECIGLKKTLVYYRGCAGKGTKTDWMMHEFRL 146
                   666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5615177IPR003441NAC domain
PROSITE profilePS5100553.24716177IPR003441NAC domain
PfamPF023653.3E-2618146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009688Biological Processabscisic acid biosynthetic process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0018315Biological Processmolybdenum incorporation into molybdenum-molybdopterin complex
GO:0042742Biological Processdefense response to bacterium
GO:0045037Biological Processprotein import into chloroplast stroma
GO:0055114Biological Processoxidation-reduction process
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0008265Molecular FunctionMo-molybdopterin cofactor sulfurase activity
GO:0009000Molecular Functionselenocysteine lyase activity
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTSLDAANAK PDDEVPLPGF RFHPTDEELV AFYLRRKVDK KPMKIDHLIS QIDIYKYDPW  60
DLPKASDTGD KEWYFFCKRG RKYRNSIRPN RVTGSGFWKA TGIDKPVYSH GGEGHECIGL  120
KKTLVYYRGC AGKGTKTDWM MHEFRLPIDS PSPNSNIINK SIAQEAEVWT VCRIFKRNVS  180
YKKYTPDWRE LPSKQATAKV GETSSSKTCS VECSDQESYI NFGAPVNVTN YHQNEKKPVV  240
VGHHSTEKNQ HQMQLGALGA FSSTSYLQAP SGASSSSHFS SDVMEALNYE NWDELRSVVE  300
FAFDRHNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-471818319171NO APICAL MERISTEM PROTEIN
1ut4_B7e-471818319171NO APICAL MERISTEM PROTEIN
1ut7_A7e-471818319171NO APICAL MERISTEM PROTEIN
1ut7_B7e-471818319171NO APICAL MERISTEM PROTEIN
4dul_A7e-471818319171NAC domain-containing protein 19
4dul_B7e-471818319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064537.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A059BPR40.0A0A059BPR4_EUCGR; Uncharacterized protein
STRINGXP_010064537.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-90NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]