PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054280.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 154aa MW: 17516.5 Da PI: 10.3801

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054280.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.7	5.7e-10	36	121	2	74
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangL 74 +k+l++sd + ++rl + ++f+++h +++ ++ ++t++d + + ++ + ++ +sg+yvl++GW keFvk gL EcC054280.10 36 KKKLKQSDLGHLSRLLIGRDFVTSHllrwmseemvrQIEGGKGADVTVRDVDTcSEHRLVFVFWASSGSYVLRGGWiKEFVKRRGL 121 699************************9998888444447889*8887777888888*********889*9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.53E-11	34	123	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.63E-10	35	122	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.2E-11	36	123	IPR015300	DNA-binding pseudobarrel domain

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
AAKYKRTRKG KGEDSGCDTE GVSTELVLLL DPYKIKKKLK QSDLGHLSRL LIGRDFVTSH 60 LLRWMSEEMV RQIEGGKGAD VTVRDVDTCS EHRLVFVFWA SSGSYVLRGG WIKEFVKRRG 120 LVMAMRSGYV GILVLASFTL AFFIRRIRFD LELV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010058715.2	3e-77	PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBL	A0A059CBK6	4e-78	A0A059CBK6_EUCGR; Uncharacterized protein
STRING	XP_010059748.1	7e-79	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM456	9	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	5e-18	B3 family protein