PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054232.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 199aa MW: 21940.9 Da PI: 7.1448 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 200.6 | 9.3e-62 | 3 | 199 | 178 | 374 |
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 fn+ v++++++l+ ++L ++p+E+laVnl+++l+r++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++F++r eal yy al++sle++ EcC054232.70 3 FNI-VSQKVSELSRDSLGCEPDEVLAVNLAFKLYRMPDESVSVENPRDELLRRVKGLAPRVVTLVEQEMNGNTAPFATRAGEALGYYGALLESLEST 98 898.799****************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvs 369 +pr+s er+ E+ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+ pl++++a++ k+ l+ + + g++v+ee+g +++gW +r+L++ EcC054232.70 99 VPRDSPERARAEEG-LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLGQHVAESLKARLESGNrvNPGFTVKEENGGVCFGWLGRTLTV 194 **************.****************************************************98877789********************** PP GRAS 370 vSaWr 374 +SaWr EcC054232.70 195 ASAWR 199 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.295 | 1 | 177 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-59 | 3 | 199 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006433 | Biological Process | prolyl-tRNA aminoacylation | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0004827 | Molecular Function | proline-tRNA ligase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
LVFNIVSQKV SELSRDSLGC EPDEVLAVNL AFKLYRMPDE SVSVENPRDE LLRRVKGLAP 60 RVVTLVEQEM NGNTAPFATR AGEALGYYGA LLESLESTVP RDSPERARAE EGLSRKLGNS 120 VACEGRDRVE RCEVFGKWRA RMGMAGFELK PLGQHVAESL KARLESGNRV NPGFTVKEEN 180 GGVCFGWLGR TLTVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-25 | 3 | 199 | 180 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060571.1 | 1e-135 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 1e-97 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A059DIP4 | 1e-133 | A0A059DIP4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060571.1 | 1e-134 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-100 | SCARECROW-like 8 |