PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054212.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LSD | ||||||||
Protein Properties | Length: 135aa MW: 14871.2 Da PI: 9.0197 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47 | 4.3e-15 | 8 | 32 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV EcC054212.60 8 CGGCHTLLMYIRGATSVQCSCCHTV 32 ************************9 PP | |||||||
2 | zf-LSD1 | 42 | 1.5e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V EcC054212.60 46 CGNCRMLLMYQYGARSVKCAVCNFV 70 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.7E-15 | 5 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 8 | 32 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.5E-12 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.1E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR 60 SVKCAVCNFV TSVGVSLIFL LRQAHWNRSS PARISNKPTG HRPHKSWLED FYSTAAAAAT 120 AHQHHERKQG KSLLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019445973.1 | 2e-49 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_019445974.1 | 1e-49 | PREDICTED: protein LOL1 isoform X2 | ||||
Swissprot | Q0J7V9 | 2e-48 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A371GF98 | 7e-48 | A0A371GF98_MUCPR; Protein LOL1 (Fragment) | ||||
STRING | XP_008373559.1 | 1e-48 | (Malus domestica) | ||||
STRING | XP_004300252.1 | 2e-48 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-49 | lsd one like 1 |
Publications ? help Back to Top | |||
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