PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054168.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 19009.2 Da PI: 10.4058 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ Fs++ L H +H EcC054168.20 46 FKCKTCNREFSSSQALGGHRASH 68 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 42 | 70 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.87E-8 | 44 | 117 | No hit | No description |
PROSITE profile | PS50157 | 10.762 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.09 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.8E-10 | 46 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.6E-10 | 95 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.663 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MVKRDREDAG VEALARANCL MLLSQVGEST NSSSPNHKSR PTERMFKCKT CNREFSSSQA 60 LGGHRASHKK PKLISGDLLH LGHAAYSSPP KPKKHECSIC GLEFPIGQAL GGHMRRHRAA 120 MLESLAGVAT KPVPVLKKSN SKRVMGLDLN SLPMEDDLTL RLGKVAPPLV LDLVL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010043584.1 | 1e-122 | PREDICTED: zinc finger protein ZAT11 | ||||
TrEMBL | A0A059D5B5 | 1e-118 | A0A059D5B5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043584.1 | 1e-121 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 5e-40 | C2H2 family protein |