PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054156.110
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 386aa    MW: 43665.9 Da    PI: 6.688
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054156.110genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.1e-1070125255
            AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++ GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  EcC054156.110  70 RFCGVSRHRWTGRYEAHLWDkLSWNVtQRkKGKQ-GAYDEEEAAARAYDLAALKYWG 125
                    566*****************88887785635555.********************98 PP
2AP252.41.3e-16168219155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  EcC054156.110 168 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 219
                    89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-1369135IPR016177DNA-binding domain
SMARTSM003803.1E-1670139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1070134IPR001471AP2/ERF domain
PfamPF008472.7E-770125IPR001471AP2/ERF domain
PROSITE profilePS5103217.09570133IPR001471AP2/ERF domain
PfamPF008474.7E-12168219IPR001471AP2/ERF domain
CDDcd000186.18E-25168229No hitNo description
SuperFamilySSF541716.34E-18168229IPR016177DNA-binding domain
SMARTSM003801.6E-26169233IPR001471AP2/ERF domain
PROSITE profilePS5103218.953169227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18169228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0009396Biological Processfolic acid-containing compound biosynthetic process
GO:0044070Biological Processregulation of anion transport
GO:0055085Biological Processtransmembrane transport
GO:0005741Cellular Componentmitochondrial outer membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003993Molecular Functionacid phosphatase activity
GO:0004326Molecular Functiontetrahydrofolylpolyglutamate synthase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0008308Molecular Functionvoltage-gated anion channel activity
GO:0030570Molecular Functionpectate lyase activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVMVKTEENV RRRRVYMVAD GEALQPRCMK RRRRDPASMV LLSCGNDGQA QQPLQGDQMS  60
SAAAVKRSSR FCGVSRHRWT GRYEAHLWDK LSWNVTQRKK GKQGAYDEEE AAARAYDLAA  120
LKYWGTSTFT NFPISDYEKE IEIMDSMTKE EYLASLRRKS SGFSRGVSKY RGVARHHHNG  180
RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYRGI NAVTNFDLSS YIRWLKPGTN  240
TPTAALEQLG PLEPQIVPST PNFVVREESD KSLLFNANTF AADYLDSPQK PDVFEAKVPL  300
SSSNKSSSPT ALGLLLRSSV FQELVQKNTV LSEEDTDGEE TKIQPQLSNE DEFAGIFYAG  360
EGDFPFDCYT GQDDIGLQQR ELQFVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11133RRRVYMVADGEALQPRCMKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033215.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A059AGJ30.0A0A059AGJ3_EUCGR; Uncharacterized protein
STRINGXP_010033215.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-75AP2 family protein