PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054128.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YA
Protein Properties Length: 325aa    MW: 35232.3 Da    PI: 8.5613
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054128.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.93.8e-29158213158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   d p++VNaKQy++I++RR+ Rak+  e+k+  + rkpy+heSRh hA+rRpRg+gGrF
  EcC054128.30 158 DGPIFVNAKQYHAIIRRRKFRAKAVLENKV--TRRKPYMHESRHLHAMRRPRGCGGRF 213
                   57****************************..99***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-31156216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.024157216IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-24160213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-21160182IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-21190213IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAMQALYLKE HEGMLHNPTS QLSSAPSAAP WWAAFGSQSF HGDSLGQSNS SPVDNPSCGD  60
HLTPAKQAGR GTEQGADKGS LTQFTIFSGD YKNSADTQKS QLPISPLPEY CARVDLGYGQ  120
QMICAKYPYG EQCYGVFSPF GSQISGRMML PLNLSTDDGP IFVNAKQYHA IIRRRKFRAK  180
AVLENKVTRR KPYMHESRHL HAMRRPRGCG GRFLNVRNSS NEEGGAEAKK DSGGEIPQPT  240
GSQSSDLSQS ESGTTPSLPK EANGSAGNLS GSEVTSMYSR EGLGHFPINQ LGPSYSFTSM  300
NDTSHSIVMP SKWVAAVDNR CNLNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-15158214260HAPB protein
4g92_A3e-15158214260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173190RRKFRAKAVLENKVTRRK
2174191RKFRAKAVLENKVTRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058967.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A059DJ720.0A0A059DJ72_EUCGR; Uncharacterized protein
STRINGXP_010058967.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.14e-39nuclear factor Y, subunit A2