PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054113.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SRS
Protein Properties Length: 111aa    MW: 11574.7 Da    PI: 4.3394
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054113.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70284.82.1e-26758103154
        DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   +slP +v+++avf+cvrv+svddge+e+aYq++v+igGhvfkG+Lyd+G+ee
  EcC054113.90   7 ESLPGQVRAPAVFKCVRVTSVDDGEDEYAYQAVVKIGGHVFKGFLYDRGVEE 58 
                   67***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-23557IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.4E-30956IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006433Biological Processprolyl-tRNA aminoacylation
GO:0006468Biological Processprotein phosphorylation
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0004827Molecular Functionproline-tRNA ligase activity
GO:0005506Molecular Functioniron ion binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0016887Molecular FunctionATPase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MDASFKESLP GQVRAPAVFK CVRVTSVDDG EDEYAYQAVV KIGGHVFKGF LYDRGVEERE  60
DIMNLSDLHL GGGGGGDRNG ASSSSPIMDP SDVYASGGGL LGGSSYGNPI N
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719986.18e-72PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK99e-37LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A059AB822e-70A0A059AB82_EUCGR; Uncharacterized protein
STRINGXP_010034259.19e-70(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-37Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]