PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054064.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 768aa    MW: 86711.2 Da    PI: 6.7819
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054064.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.96.3e-1163957661374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL +cA+av+ +d ++a+++L+++++++sp gd  qRla+ f+eAL+ar+  ++ ++y  l ++++s    +e l+a++++  v+P+ +f+ + 
  EcC054064.20 395 LRNLLCSCAQAVAVEDRKNANQYLKQIRQHSSPFGDGSQRLAHSFAEALKARMDCTGAQVYTELGSKRKS---ATEMLKAYRAYLSVFPFQRFAIIY 488
                   6899*********************************************************999888887...89********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N++Il   e+++++HiiDf+i +G+QWpaL++ La Rp+gpp+lRiTg++ p+sg   +e+++etg+rLak++e+++vpfe+n+ +a+++e++++e
  EcC054064.20 489 SNHMILSISEKATKLHIIDFGILYGFQWPALIHCLARRPGGPPKLRITGIELPQSGfrPAERVQETGRRLAKYCERFKVPFEYNA-IAQKWETIRIE 584
                   *******************************************************9*****************************.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+++++E++aVn+ ++ ++llde+v ++s+rd+vLklv +++P+++v++  + + n+  F+ rf e l +ysalfd+++aklpre+  r + Ere+
  EcC054064.20 585 DLKISKDEVVAVNCLFRFKNLLDETVIINSPRDQVLKLVHRIRPRIFVHSILNGSFNACFFVSRFREVLFHYSALFDAFDAKLPREHPMRLVFEREF 681
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ++re+ nv+aceg+er+er et+++W+ r ++aGFkp+pl+  ++k+ k+ l++ + d + v+++ +++++gWk+r L++ S+W+
  EcC054064.20 682 FSREALNVIACEGTERVERPETYKQWQIRNTRAGFKPLPLDPVIMKKLKSKLKEGYLDDFVVDKDGHWMLQGWKGRILYASSCWE 766
                   ********************************************************888*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.534369746IPR005202Transcription factor GRAS
PfamPF035142.2E-113395766IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0031047Biological Processgene silencing by RNA
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MDPQYAGYSG PFSGFNFHDQ TLAPFSNPFE ELANHLLLDD PESDLSVHFP SFASDPEPCN  60
SAVSPSFSTD GDFLSDYGDT SDPTLKYINQ MLMEEDIDDK PCMFHDPLAL QAAEKSLYDA  120
LCPKDRPSQN QSPLYMDSPD DNCSGSSNGY CSSSTITSST ASGGNSVDFP GTGDYCESRP  180
SILQPHIPEN FVFQATAIPS RQSGHEFRKN VITKAKGMLG SGSAMGELML PNLFADSNSM  240
LFFQKGFEEA SRFIPKGNPL SIDTEKRMPH LVSRRETARA AIKAENSEPE LSYLYEIKGN  300
KKHEREDAEF EYQRSTKQPA VCVEENELAD IFDRVLLCAP TGNKPDSKSP GSRFEDASNN  360
GASQNVQKNL QSPALSAEQL SVKKPMSDKK EVVDLRNLLC SCAQAVAVED RKNANQYLKQ  420
IRQHSSPFGD GSQRLAHSFA EALKARMDCT GAQVYTELGS KRKSATEMLK AYRAYLSVFP  480
FQRFAIIYSN HMILSISEKA TKLHIIDFGI LYGFQWPALI HCLARRPGGP PKLRITGIEL  540
PQSGFRPAER VQETGRRLAK YCERFKVPFE YNAIAQKWET IRIEDLKISK DEVVAVNCLF  600
RFKNLLDETV IINSPRDQVL KLVHRIRPRI FVHSILNGSF NACFFVSRFR EVLFHYSALF  660
DAFDAKLPRE HPMRLVFERE FFSREALNVI ACEGTERVER PETYKQWQIR NTRAGFKPLP  720
LDPVIMKKLK SKLKEGYLDD FVVDKDGHWM LQGWKGRILY ASSCWEPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5340276726380Protein SCARECROW
5b3h_A3e-5340276725379Protein SCARECROW
5b3h_D3e-5340276725379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724302.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D5R70.0A0A059D5R7_EUCGR; Uncharacterized protein
STRINGXP_010046395.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]