PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054064.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 707aa    MW: 79798.8 Da    PI: 5.9344
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054064.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.79.4e-1143307041373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL  cA+a+s++dl+ a++lL++++e++sp+gd  +Rla+yf+++L+arl+++ +++ +  ++  +++++++++l+a++l   ++P+ kfs   
  EcC054064.10 330 LRTLLSLCAQAISTSDLRTANELLKQIRENSSPSGDGSERLAHYFANGLEARLVGNKTGTQDFYSTIVARRTSVADVLKAYHLHISTCPFKKFSICF 426
                   5789999************************************************999999999888888889************************ PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN +Il+ +e+++++HiiDf+i+ G+QWp L+q+L+sR+egp +lRiTg++ p++g   +e++eetg+rL+k++e+++vpfefn ++++++e+++le
  EcC054064.10 427 ANYMILKLAEKATTLHIIDFGITFGFQWPILIQKLSSRSEGPCKLRITGIELPQAGfrPAERIEETGRRLKKYCERFNVPFEFNCIASRHWESIKLE 523
                   *******************************************************9*****************************9999******** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+++++E++aVn+  + ++llde+v+ +++rd+vL+l+++++P+++v++e   ++n++ Fl+rf eal   sal+d++++ l  +s+er + Ere+
  EcC054064.10 524 DLKIQSNETVAVNCLDRFKNLLDETVEDKNPRDAVLNLIRQMKPDIFVHSELSGSYNAPFFLTRFREALFQLSALYDMYDVILDGDSKERLVFEREF 620
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    grei+nv+aceg+er+er et+++W+ r ++aGFk++pl+++ +k  ++ ++ ++ + + ++e+ ++++lgW++r ++  S+W
  EcC054064.10 621 HGREIMNVIACEGTERVERPETYKQWQVRHMRAGFKALPLDQELMKLFRSKMKACYHKDFGLNEDGNWMLLGWRGRIVFCSSCW 704
                   ********************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.599304685IPR005202Transcription factor GRAS
PfamPF035143.3E-111330704IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0031047Biological Processgene silencing by RNA
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
SGRGPFGPSV SSSSAPSPEG DSLSPSGDMD SPDPVLKYIN QMLMEENMEE QPWEFADQVA  60
LLNAEKSLYD ALRQQHSEVS DQSPSQLDLS DYIESPNSNL SGSSSAHGSH DATSVTISSS  120
DSADANFLYT IEEHSRAGLE NFNLDVQSSV DSSSQLLSNX XXXXXXEESL HELLVKSIFS  180
NSESMIQFKK GLEEASKFLP TNNQLGINLE DSKPPSQAKK GTSRMRINED INVKRSSDGF  240
KGLKNHERDE DASEEGRANK QTALYTEESE LSDLFDKVLL CNENRGAMCS GNESVERGLS  300
KDIRQQRNKR GSNRGRGRGK KQESKNTVDL RTLLSLCAQA ISTSDLRTAN ELLKQIRENS  360
SPSGDGSERL AHYFANGLEA RLVGNKTGTQ DFYSTIVARR TSVADVLKAY HLHISTCPFK  420
KFSICFANYM ILKLAEKATT LHIIDFGITF GFQWPILIQK LSSRSEGPCK LRITGIELPQ  480
AGFRPAERIE ETGRRLKKYC ERFNVPFEFN CIASRHWESI KLEDLKIQSN ETVAVNCLDR  540
FKNLLDETVE DKNPRDAVLN LIRQMKPDIF VHSELSGSYN APFFLTRFRE ALFQLSALYD  600
MYDVILDGDS KERLVFEREF HGREIMNVIA CEGTERVERP ETYKQWQVRH MRAGFKALPL  660
DQELMKLFRS KMKACYHKDF GLNEDGNWML LGWRGRIVFC SSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4433770626380Protein SCARECROW
5b3h_A2e-4433770625379Protein SCARECROW
5b3h_D2e-4433770625379Protein SCARECROW
5hyz_A2e-443307045374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724299.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_018724300.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D4Z40.0A0A059D4Z4_EUCGR; Uncharacterized protein
STRINGXP_010046395.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]