PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC054060.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 466aa MW: 49867.1 Da PI: 7.0837 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.3 | 2.3e-25 | 204 | 255 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +++Wtp+LH++Fv+aveqL G +kA+P++ilelm+ ++L +++++SHLQkYR+ EcC054060.50 204 KVDWTPDLHRKFVQAVEQL-GVDKAVPSRILELMGNDSLNRHNIASHLQKYRS 255 899****************.********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.742 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.84E-16 | 200 | 258 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 200 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-23 | 202 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-7 | 205 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 466 aa Download sequence Send to blast |
MLAVPPLREE RGDETRRGET CFSIPGAGGG GGGEDDVALF LNFSDDLLDS INFDDIFAGD 60 DALPDLEMDA AEVSTEFSTG SENQAKANPS VTWDGGGPKE LSEAEERSGS GSAAGAGAGA 120 GEPAISRSGR SKMEQEAPDL QRGCRGRXXX XXXXSSGGEG SEKKREGRSG GKRKEERDRG 180 RRSSAAAAAQ GKTNPQAQGK RKFKVDWTPD LHRKFVQAVE QLGVDKAVPS RILELMGNDS 240 LNRHNIASHL QKYRSQRRHL QSLEADAARW SKRRQIYGGA AAAGGGSKRV MTPWAAPAMG 300 FPPAPPSVHH FRPLHVWGHP TLSPSLKHGA WPLHSQPSLV PSPLPTWVPP PLLEHPPPPP 360 PLPPPDPSYW HQQGFGFAPV PGIPHHQGVY KIDPSIGVLT PLGQLASSQP SFDFHLWSES 420 VDAAIGEVLS KPWQPLPLGL KPPSLECVLG ELQRQGIASI PPASSP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-15 | 199 | 254 | 2 | 57 | ARR10-B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035797.1 | 0.0 | PREDICTED: transcription activator GLK2 | ||||
TrEMBL | A0A059A0K2 | 0.0 | A0A059A0K2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035797.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20570.1 | 6e-51 | GBF's pro-rich region-interacting factor 1 |