PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054055.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-PHD
Protein Properties Length: 723aa    MW: 79747.9 Da    PI: 4.714
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054055.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.21.4e-13542589552
                   SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
      Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                   +++ +  +++L e+F++n+yp +++ e+LA +lg+t++qVk WF N R
  EcC054055.10 542 RRLGEAVTQRLHEAFKENQYPERAASEKLAGELGITTQQVKKWFENAR 589
                   556677899*************************************99 PP
2PHD39.21.6e-13186241151
                   SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
           PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                   +C+ Cg+   +++++++lCdg C++ fH++Cl+++l  e++p     wlC+ C++k
  EcC054055.10 186 FCAKCGSkdLTADNDIILCDGaCDRGFHQYCLEPPLHAEDVPPAdqGWLCPGCDCK 241
                   699***977778********66***************999998899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.65E-14176244IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-13183241IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.119184241IPR019787Zinc finger, PHD-finger
PfamPF006283.2E-11186241IPR019787Zinc finger, PHD-finger
SMARTSM002491.6E-8186239IPR001965Zinc finger, PHD-type
CDDcd155047.36E-28186238No hitNo description
PROSITE patternPS013590187238IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.2E-13525589IPR009057Homeodomain-like
SuperFamilySSF466891.67E-11531593IPR009057Homeodomain-like
SMARTSM003893.2E-10534599IPR001356Homeobox domain
PROSITE profilePS5007113.021535595IPR001356Homeobox domain
CDDcd000862.88E-10538589No hitNo description
PfamPF000464.6E-11543589IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006414Biological Processtranslational elongation
GO:0005853Cellular Componenteukaryotic translation elongation factor 1 complex
GO:0003677Molecular FunctionDNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
HMEELTNSSS YDPSELQQEN LTGNSEGSGH RDRRTSTRLK ERNTWRSSLG SDRVLRSRSK  60
DKSIAESKDD VVNPGEEVKR KQRKKRQARE GIADEYSRIR KNLSYMLNRI GYERNLIDAY  120
SGEGWKGLSL EKIKPEKELQ RATSEIVKRK LRIRDLFQQL DSLCAEGKLP EALFDSEGMI  180
DSEDIFCAKC GSKDLTADND IILCDGACDR GFHQYCLEPP LHAEDVPPAD QGWLCPGCDC  240
KVDCIDLLNE SQGANLSIAD SWEKVFPEVA TADKTEDPNL GLPSDDSDDA DYDPDAPQVD  300
EDLGDDSSSE DQGNDSSSDE SGCNVASDKS GASLKYNRIG LPSDDSEDDD FDPDAPDSEK  360
VKEEGSSSDF TSDSEDLAAA VGGVADEVNS YRGGGRRSSR NSFEKKEIVK GELQSLLEGD  420
ADKDVSVCMS GKRHVERLDY KKLYDEEFGG KSSDSSDDED WSDTAEPSKR KRGADKVALA  480
SNNGNFTSGE IIEHNKNGNE QTPRRRTNNR MDSASTNSIT AIPRRSSSAP ESTGRKARST  540
YRRLGEAVTQ RLHEAFKENQ YPERAASEKL AGELGITTQQ VKKWFENARW SFNHPSGSKV  600
RVSAKDMIME NPRPQLSTGP HSSAPEMITD DAPSNGIPNA EPSGVASMPE CIDKDVKNSG  660
VGGPQMNRKS YDSSHLGKRK EKADNVVFGP DQVNQTQALQ DDSAKASEPQ TSSRRHTRSK  720
SKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065948.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
RefseqXP_010065949.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
RefseqXP_010065951.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
RefseqXP_010065952.10.0PREDICTED: homeobox protein HAT3.1 isoform X2
TrEMBLA0A059BBR60.0A0A059BBR6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010065948.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.18e-97Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain