PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053800.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 572aa    MW: 64298.2 Da    PI: 5.3913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053800.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.24.4e-1292025711373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL++cA+ +s++d+++ ++l+++ +  +s +g+p+qRl ay+ e+L ar  +s+s++y++l+++e +    ++ l+++++++e++P+lkf++++
  EcC053800.50 202 LKQLLIACAKSLSDNDMHKFEKLIEKARRAVSISGEPIQRLGAYMIEGLVARKEESGSNIYHTLRCREPE---GKDLLSYMHILYEICPYLKFGYMA 295
                   689******************************************************************9...9*********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN aI ea ++e+r+HiiDf+i qG+QW +LlqaLa+Rp+gpp +RiTg+++p +   +   le+++ rLa + e++++p+efn  + +   d++ +
  EcC053800.50 296 ANGAIAEACKNEDRIHIIDFQIAQGTQWTTLLQALAARPSGPPYVRITGIDDPVNRyaRGAGLEAVAGRLAVISEKFKIPVEFNG-LPEFAPDVTRD 391
                   *****************************************************9999999*************************.599999***** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv++++eqe+++n+++Fl+rf+e+l+yy a+f+s++++lpr+ +eri+vE+++
  EcC053800.50 392 MLDVRPGEALAVNFPLQLHHTPDESVDITNPRDGLLRMVKSLSPKVITLIEQESNTNTTPFLTRFVETLDYYLAMFESIDVTLPRDRKERINVEQHC 488
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e+++ ++lgWkdr Lvs+SaW
  EcC053800.50 489 LARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRNLLRYYS-ENYTLVEKDDGMLLGWKDRFLVSASAW 571
                   *****************************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.201176553IPR005202Transcription factor GRAS
PfamPF035141.5E-126202571IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006888Biological ProcessER to Golgi vesicle-mediated transport
GO:0055114Biological Processoxidation-reduction process
GO:0000287Molecular Functionmagnesium ion binding
GO:0003723Molecular FunctionRNA binding
GO:0010333Molecular Functionterpene synthase activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MESHPLYRYS ETGAGLSFTS SHPTVPSLPN KLFGHSKFEI RESPISPFLR NFDSETLTVL  60
SDNQEQYSST DNYSGVSSSY NSSLETTSGF QRSSPSQDGC RDSLLSCSGR PTSLQNEHHS  120
QNTAYTLQEL EDVLMDDGQG VRVTDTSIGE HVWDQNPHGS QFSCPEDSVA FIQSQSGKSV  180
HAEKHKEAIE ESSVQDVPPG DLKQLLIACA KSLSDNDMHK FEKLIEKARR AVSISGEPIQ  240
RLGAYMIEGL VARKEESGSN IYHTLRCREP EGKDLLSYMH ILYEICPYLK FGYMAANGAI  300
AEACKNEDRI HIIDFQIAQG TQWTTLLQAL AARPSGPPYV RITGIDDPVN RYARGAGLEA  360
VAGRLAVISE KFKIPVEFNG LPEFAPDVTR DMLDVRPGEA LAVNFPLQLH HTPDESVDIT  420
NPRDGLLRMV KSLSPKVITL IEQESNTNTT PFLTRFVETL DYYLAMFESI DVTLPRDRKE  480
RINVEQHCLA RDIVNIIACE GKERVERHEL FGKWKSRLTM AGFRQYPLSS YVNSVIRNLL  540
RYYSENYTLV EKDDGMLLGW KDRFLVSASA WY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6020957126378Protein SCARECROW
5b3h_A1e-6020957125377Protein SCARECROW
5b3h_D1e-6020957125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062948.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018732329.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A059BVU60.0A0A059BVU6_EUCGR; Uncharacterized protein
STRINGXP_010062948.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-178GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]