PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053730.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 267aa    MW: 30089.5 Da    PI: 7.0625
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053730.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  ++k++G  +W++ a+  g++R++k+c++rw +yl
     EcC053730.10 16 KGAWSAEEDQKLTAYIKRHGIWNWSRMAEPAGLRRSGKSCRLRWMNYL 63
                     79******************99************************97 PP
2Myb_DNA-binding48.42.2e-1570112246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eE e ++++++ lG++ W++Ia+++  gRt++++k++w++
     EcC053730.10  70 GNFTKEEVETIIKLHEFLGNK-WSAIASKLD-GRTDNEVKNYWNT 112
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2451163IPR017930Myb domain
SuperFamilySSF466894.12E-2813110IPR009057Homeodomain-like
SMARTSM007172.4E-111565IPR001005SANT/Myb domain
PfamPF002495.5E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-221770IPR009057Homeodomain-like
CDDcd001678.26E-91863No hitNo description
PROSITE profilePS5129422.17164118IPR017930Myb domain
SMARTSM007172.8E-1468116IPR001005SANT/Myb domain
PfamPF002491.6E-1370112IPR001005SANT/Myb domain
CDDcd001673.89E-1071114No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2471117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAELGVVLDE KRRLKKGAWS AEEDQKLTAY IKRHGIWNWS RMAEPAGLRR SGKSCRLRWM  60
NYLRPNLRHG NFTKEEVETI IKLHEFLGNK WSAIASKLDG RTDNEVKNYW NTRLKKQFKG  120
KSMQKPRKSE AARVCNSVDA NHESSSQEEA RSSTPTSTPV QLSNLGDFTG NQTSSPENFG  180
SSGSNQAIGV LGDKGNSFDN NLWSSFVDDE VQSYLWAQNF SVEDAHMLQD LGALFMDSTA  240
TVLYPGWPLE TASSASLEDF AVNLWEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141185108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051852.10.0PREDICTED: transcription factor WER
TrEMBLA0A059CBQ50.0A0A059CBQ5_EUCGR; Uncharacterized protein
STRINGXP_010051852.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-48MYB-like 102