PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053697.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 485aa    MW: 52810.2 Da    PI: 7.352
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053697.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.4e-15147196155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++ rW+++I+d      + k+++lg f+ta  Aa+ +++a+ k++g
  EcC053697.20 147 SQYRGVTFYRRTSRWESHIWD------CgKQVYLGGFDTAHAAARSYDRAAIKFRG 196
                   78*******************......55************************998 PP
2AP242.61.6e-13239289155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV+ +k  grW+A+   +     + k+++lg f+++ eAa+a+++a+ k +g
  EcC053697.20 239 SKYRGVTMHK-CGRWEARMGQF----LSkKYIYLGLFDSEIEAARAYDKAAIKCNG 289
                   89********.7******5553....235**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-14147206IPR016177DNA-binding domain
PfamPF008476.8E-8147196IPR001471AP2/ERF domain
PROSITE profilePS5103216.818148204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-15148204IPR001471AP2/ERF domain
CDDcd000182.63E-21148206No hitNo description
SMARTSM003809.5E-30148210IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17239298IPR016177DNA-binding domain
CDDcd000184.52E-24239299No hitNo description
PfamPF008477.8E-9239289IPR001471AP2/ERF domain
PROSITE profilePS5103215.791240297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16240297IPR001471AP2/ERF domain
SMARTSM003805.1E-32240303IPR001471AP2/ERF domain
PRINTSPR003672.9E-6241252IPR001471AP2/ERF domain
PRINTSPR003672.9E-6279299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006260Biological ProcessDNA replication
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004601Molecular Functionperoxidase activity
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0020037Molecular Functionheme binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MLDLNLGVVP SDSIGAASLG NLPEPPASRP VASPRSFATS ILDVEAAAGD GGVAFPYDFG  60
LVDGRIGCSR RAGNGVGAGD GDRTIQLFPA PAPADGGGCF SGFQSRRPRL ELTCPEGARA  120
GEAPLPPQQQ QRASVKRSRR GLRSRSSQYR GVTFYRRTSR WESHIWDCGK QVYLGGFDTA  180
HAAARSYDRA AIKFRGLDAD INFNISDYEE DIKQMSNFTK EEFVHILRRQ STGFARGSSK  240
YRGVTMHKCG RWEARMGQFL SKKYIYLGLF DSEIEAARAY DKAAIKCNGR EAVTNFEPSK  300
YEEEEEEIGE AGKGARNYVK MLTFSTCVCL LVGEKPFQHV LILELLDTDG NHSLDLNLGI  360
APPEKLDSTG GPRFPLQWND MHCHPIPRIE NSYSAISGAQ ELHHPAVVSE HLSCLSGQNS  420
IFFPMHKGTA LEKRAEVDPL SNWASKFGGP HDGTTPAPFF STAASSGFSS SVAASPSAAA  480
YHQYL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728721.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ8H4439e-97AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A059DF431e-144A0A059DF43_EUCGR; Uncharacterized protein
STRINGXP_010068165.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-87AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]