PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC053696.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25280.2 Da PI: 4.8286 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.9 | 1.3e-21 | 24 | 75 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 f++eq++ Le++Fe++ +p+ +++ eLA++lgL+ rqV +WFqNrRa++k EcC053696.40 24 KGFSDEQIRLLETMFESEAKPDPRRKMELARELGLEPRQVAIWFQNRRARWK 75 569************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117 | 1.1e-37 | 23 | 113 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+ +s+eq++lLE++Fe+e k +p+rK+elareLgl+prqva+WFqnrRAR+k+kq+E++y++L+++yd+l +e e L++e+++L++el++ EcC053696.40 23 KKGFSDEQIRLLETMFESEAKPDPRRKMELARELGLEPRQVAIWFQNRRARWKSKQVEQEYRVLRASYDKLLAEFECLKTEKQDLENELQK 113 889*************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-20 | 12 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 19.03 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-20 | 18 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.4E-19 | 23 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-22 | 25 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.04E-17 | 26 | 78 | No hit | No description |
PRINTS | PR00031 | 1.2E-6 | 48 | 57 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-6 | 57 | 73 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.0E-14 | 77 | 118 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEKSENCTAG NMKKKKGKSK NMKKGFSDEQ IRLLETMFES EAKPDPRRKM ELARELGLEP 60 RQVAIWFQNR RARWKSKQVE QEYRVLRASY DKLLAEFECL KTEKQDLENE LQKLSGMLDK 120 NHGGGRICRE ASNLEDEDTD CKNEANPFGP HESFDQSLIV ASPDDQLNET EKSSEDVRES 180 RDEENCSVAL PEKWSNFGPS DILDYSCSNA APWWNFWT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 77 | RRARWKSKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018729630.1 | 1e-160 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A059DFB2 | 1e-159 | A0A059DFB2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010068823.1 | 1e-151 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 5e-38 | homeobox 7 |