PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC053575.100

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 701aa MW: 80003.6 Da PI: 6.889

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC053575.100	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.4	9.6e-113	330	699	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++lL++cA+av+s+d++ ++alL+ ++++asp g+ +qRla+yf+ +L+arla+++s++y+ l ++t+ ++ l+a++l+ ++P+ + s+++ EcC053575.100 330 RTLLMRCAQAVASNDHSSTNALLNAIRKHASPFGNGTQRLAHYFADGLEARLAGTGSQIYRGLVNKKTT---AADMLNAYQLYLAACPFQRTSNFV 422 689**********************************************************999999...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N++Il+ v+ + +H+iDf+i +G+QWp+L+q L+ Rp + +lRiTg++ p++g +e++eetg+rLa++Ae+++vpfe+n+ +akr+e ++l EcC053575.100 423 SNKTILDTVADKMSIHVIDFGILYGFQWPTLIQHLSRRPCP-TKLRITGIDLPQPGfrPAERVEETGRRLANYAESFNVPFEYNA-IAKRWEFIKL 516 *********************************9865.79*******9*************************.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 eeL+++++E+++Vn++++ ++l+de+ + es rd vL+l+++ +P+++++ + hn++ F++rf eal+++s+lf++l++ +pres+er+ +E+ EcC053575.100 517 EELKIDRDEVTIVNCMYRFKNLFDETITEESSRDIVLNLIRRAQPDLFIHGVINGTHNAPFFVTRFREALHHFSSLFNMLDSVIPRESQERMLIEK 612 ******************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak.qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++gre+ n +aceg er+er et+++W++r ++aGF +vpl+ +++ ++ +++ ++ +++ v+e +++l+lgWk+r + ++S W+ EcC053575.100 613 DMFGREALNSIACEGWERVERPETYKQWQSRNMRAGFVQVPLGRNVVRfAIEQIVSSYH-KEFLVDEVHKWLLLGWKGRFICALSTWK 699 ****************************************998625677888888.56***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.254	303	679	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-110	330	699	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0004252	Molecular Function	serine-type endopeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MMDPLMGALY PSNGLRPDDQ SISAVVDHCL ASRPTFQSAP DRCGEKHHLV DVAPFSNDCC 60 DAPYTEETEF SDAVFEYISR ILMEEDIEEK TYMLQDSLDL LSAEKSFYEV LGKKYPPSPE 120 PSHANCITYM DKHSNDSFLN NTRYTSTNGS RKNGYFADNG WVQNPCAYGT SSFERDISPA 180 AFRPNQAGNS EMLDLCRESQ FVRQFRMGVE ESSKFLPNQA TTELLYPEEI DKADRLSALK 240 RKESLHWEEG NMEERSSKQA FVHEESILRS ETFDVVLLSS SQGEGLARLL SLRASLKNGV 300 NKIEYKIQEP KGGRGRGKKK RGKVEVVDVR TLLMRCAQAV ASNDHSSTNA LLNAIRKHAS 360 PFGNGTQRLA HYFADGLEAR LAGTGSQIYR GLVNKKTTAA DMLNAYQLYL AACPFQRTSN 420 FVSNKTILDT VADKMSIHVI DFGILYGFQW PTLIQHLSRR PCPTKLRITG IDLPQPGFRP 480 AERVEETGRR LANYAESFNV PFEYNAIAKR WEFIKLEELK IDRDEVTIVN CMYRFKNLFD 540 ETITEESSRD IVLNLIRRAQ PDLFIHGVIN GTHNAPFFVT RFREALHHFS SLFNMLDSVI 600 PRESQERMLI EKDMFGREAL NSIACEGWER VERPETYKQW QSRNMRAGFV QVPLGRNVVR 660 FAIEQIVSSY HKEFLVDEVH KWLLLGWKGR FICALSTWKP A

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MMDPLMGALY PSNGLRPDDQ SISAVVDHCL ASRPTFQSAP DRCGEKHHLV DVAPFSNDCC  60
DAPYTEETEF SDAVFEYISR ILMEEDIEEK TYMLQDSLDL LSAEKSFYEV LGKKYPPSPE  120
PSHANCITYM DKHSNDSFLN NTRYTSTNGS RKNGYFADNG WVQNPCAYGT SSFERDISPA  180
AFRPNQAGNS EMLDLCRESQ FVRQFRMGVE ESSKFLPNQA TTELLYPEEI DKADRLSALK  240
RKESLHWEEG NMEERSSKQA FVHEESILRS ETFDVVLLSS SQGEGLARLL SLRASLKNGV  300
NKIEYKIQEP KGGRGRGKKK RGKVEVVDVR TLLMRCAQAV ASNDHSSTNA LLNAIRKHAS  360
PFGNGTQRLA HYFADGLEAR LAGTGSQIYR GLVNKKTTAA DMLNAYQLYL AACPFQRTSN  420
FVSNKTILDT VADKMSIHVI DFGILYGFQW PTLIQHLSRR PCPTKLRITG IDLPQPGFRP  480
AERVEETGRR LANYAESFNV PFEYNAIAKR WEFIKLEELK IDRDEVTIVN CMYRFKNLFD  540
ETITEESSRD IVLNLIRRAQ PDLFIHGVIN GTHNAPFFVT RFREALHHFS SLFNMLDSVI  600
PRESQERMLI EKDMFGREAL NSIACEGWER VERPETYKQW QSRNMRAGFV QVPLGRNVVR  660
FAIEQIVSSY HKEFLVDEVH KWLLLGWKGR FICALSTWKP A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-49	333	699	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037828.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A059A681	0.0	A0A059A681_EUCGR; Uncharacterized protein
STRING	XP_010037828.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein