PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053523.140
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 363aa    MW: 40529.6 Da    PI: 6.4952
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053523.140genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.63.4e-1065109442
       zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                    ++C+ +e+ ++++ Ce +   lC++C  e+H+       Ht+vp+
  EcC053523.140  65 WICNSCENSPASFACEADAAVLCANCDIEIHSAnmlacqHTRVPV 109
                    79*****************************769*******9986 PP
2CCT66.48.2e-23294337144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRYkeKrk RkF+KkirY+ RK++A+sRpRvKGrF++++
  EcC053523.140 294 REAKVLRYKEKRKARKFNKKIRYALRKTYADSRPRVKGRFARRS 337
                    9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.8451966IPR000315B-box-type zinc finger
SMARTSM003360.0611966IPR000315B-box-type zinc finger
CDDcd000211.80E-42266No hitNo description
PROSITE profilePS5011910.3162109IPR000315B-box-type zinc finger
PfamPF006433.2E-865109IPR000315B-box-type zinc finger
CDDcd000212.25E-865109No hitNo description
SMARTSM003365.1E-667109IPR000315B-box-type zinc finger
PROSITE profilePS5101716.539294336IPR010402CCT domain
PfamPF062031.7E-17294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0006457Biological Processprotein folding
GO:0007067Biological Processmitotic nuclear division
GO:0000775Cellular Componentchromosome, centromeric region
GO:0005730Cellular Componentnucleolus
GO:0009506Cellular Componentplasmodesma
GO:0012511Cellular Componentmonolayer-surrounded lipid storage body
GO:0016021Cellular Componentintegral component of membrane
GO:0003723Molecular FunctionRNA binding
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005515Molecular Functionprotein binding
GO:0008237Molecular Functionmetallopeptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0009055Molecular Functionelectron carrier activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASTLLHKEL MNVSPSTHGY PRLCNMCKAA SCVFFCQSHS AFLCAGCDQI AHEGNISDAQ  60
HERFWICNSC ENSPASFACE ADAAVLCANC DIEIHSANML ACQHTRVPVT PLSSSLYGPP  120
SSTLDQNTET EGQKAHECIE EDEINSWLLL DPPSRKGNQT SDELLYGGEA DEYLDLIEYG  180
SCTEHQALDE YNPLETRIDK GQSTSDGVVP VQLMDSTAQQ NVCWDNKNGI AKDAFVSNPS  240
SNHTVSHSFF HASISRLQTM NEISNSYARI PIGTTGMFSN PPLLRPFQNP AINREAKVLR  300
YKEKRKARKF NKKIRYALRK TYADSRPRVK GRFARRSAAE LKVDQMFSME DYGYGFVSCI  360
KFC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039114.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A059A4K40.0A0A059A4K4_EUCGR; Uncharacterized protein
STRINGXP_010039114.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-60CONSTANS-like 2