PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053523.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 428aa    MW: 48607.7 Da    PI: 8.341
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053523.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.82.6e-401082493133
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg... 88 
                    kkdrhski T++g+RdRR+Rls+++a++fF Lqd+LG+dk+skti WLl ++ paikel++         s        + +s+ s s+ +     
  EcC053523.10 108 SKKDRHSKINTAQGMRDRRMRLSVDVAREFFNLQDMLGLDKASKTIKWLLVKSTPAIKELARGlqktkngeS-------IPIRSVPSRSEREMMpei 197
                   69***********************************************************99655443320.......222222222222222334 PP

           TCP  89 .......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                          ++++ a+k+k +q+++  ++   +esrakar+ra++rtrekm+++
  EcC053523.10 198 griakdnQQETIAKKRKVKQSRKIVFRPTGRESRAKARERAKQRTREKMMLQ 249
                   4555543333333344444444444577778******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-39108247IPR005333Transcription factor, TCP
PROSITE profilePS5136933.823109167IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.444228245IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0006457Biological Processprotein folding
GO:0007067Biological Processmitotic nuclear division
GO:0000775Cellular Componentchromosome, centromeric region
GO:0005730Cellular Componentnucleolus
GO:0009506Cellular Componentplasmodesma
GO:0012511Cellular Componentmonolayer-surrounded lipid storage body
GO:0016021Cellular Componentintegral component of membrane
GO:0003723Molecular FunctionRNA binding
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005515Molecular Functionprotein binding
GO:0008237Molecular Functionmetallopeptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0009055Molecular Functionelectron carrier activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
TIDLISSSER PILQHPIFHD FSFDSRPEDL PFSLYSLPSP FIFNDDENED GASLQIHHDL  60
SSQGHQPLNP HHQMTDLMTF SAGDSIGHNT GVKPEATAEQ VVPTERSSKK DRHSKINTAQ  120
GMRDRRMRLS VDVAREFFNL QDMLGLDKAS KTIKWLLVKS TPAIKELARG LQKTKNGESI  180
PIRSVPSRSE REMMPEIGRI AKDNQQETIA KKRKVKQSRK IVFRPTGRES RAKARERAKQ  240
RTREKMMLQG LNRGDRPCKE WTESDMNDRL PSNCSIGTSE DSGNRGSGIE VPNMDVQVQF  300
EGESSYDQKR HYSERNETVA DNASEVHNFN HPQSTRVEVS AGFNIFPLDK YNCQPTIRSI  360
QIDWLVICFV LCFLSNERHQ ASMNCQIPMK SSADQCMNSC SIRSLNLNFF TSHGKPTPAN  420
ICAKLDNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037348.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_018720591.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_018720592.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A059A6S20.0A0A059A6S2_EUCGR; Uncharacterized protein
STRINGXP_010037346.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-26TCP family protein