PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053516.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 273aa    MW: 30200.6 Da    PI: 6.7889
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053516.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.19.6e-50222733263
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs.evsPilkfshlta 98 
                   + +le+A+a+ +g    a+++L rls   +p++++ qRl  y++ AL++r++         +   +     ++e ++ ++l+s  +sP++  ++ +a
  EcC053516.10  22 QSVLEAATAIYEGRVDVASEILRRLSAVPNPRRSSRQRLRGYMLSALKSRVSP--------VDYPPP----MAELFTEDHLLSpRLSPLFLCAFQVA 106
                   6789************************************************9........222222....334444445544279*********** PP

          GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     aI+ea++++   +++H+i fdi+q + + +L+ aL+  R+++p +l+iT++++ + +  e+l+  g+ L++fA + gv++ f++ v+++l++l+ 
  EcC053516.10 107 IGAIVEAASEQpstNKLHVIAFDIGQKGLYDNLIVALSrLRAGNPFTLKITTLAD-SINGVERLRMRGDGLSDFAVHWGVRLVFKI-VTQKLSELSR 201
                   *********9999999**********************77778888*********.66699************************9.79******** PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                   ++L ++p+E+laVnl+++l r++desvs e++rde+L+ vk+l P+vv++veqe++ n++++  r+ eal y
  EcC053516.10 202 DSLGCEPDEVLAVNLAFKLCRMPDESVSAENTRDELLRRVKGLAPQVVTLVEQEMNGNTAPLPMRVXEALAY 273
                   *********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.221273IPR005202Transcription factor GRAS
PfamPF035143.3E-4722273IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
LSSMESVETP IQRSPVSILW EQSVLEAATA IYEGRVDVAS EILRRLSAVP NPRRSSRQRL  60
RGYMLSALKS RVSPVDYPPP MAELFTEDHL LSPRLSPLFL CAFQVAIGAI VEAASEQPST  120
NKLHVIAFDI GQKGLYDNLI VALSRLRAGN PFTLKITTLA DSINGVERLR MRGDGLSDFA  180
VHWGVRLVFK IVTQKLSELS RDSLGCEPDE VLAVNLAFKL CRMPDESVSA ENTRDELLRR  240
VKGLAPQVVT LVEQEMNGNT APLPMRVXEA LAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-135827341261GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727334.11e-138PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR72e-67SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DD351e-133A0A059DD35_EUCGR; Uncharacterized protein
STRINGXP_010043392.11e-133(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.18e-70SCARECROW-like 8