PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC053424.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 26179.9 Da PI: 7.4175 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.4e-39 | 26 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC ++Cv+apyf +eq +++fa+vh++FGasn +kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++ EcC053424.10 26 PCGACKFLRRKCITGCVFAPYFDSEQgAAHFAAVHRVFGASNASKLLLNIPAHRRQDAVVAICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSY 122 7***********************9989********************************************************************9 PP DUF260 97 lkee 100 l+++ EcC053424.10 123 LQAH 126 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.593 | 25 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-38 | 26 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSSNPSSSAS AGGEIASTAG GGSGGPCGAC KFLRRKCITG CVFAPYFDSE QGAAHFAAVH 60 RVFGASNASK LLLNIPAHRR QDAVVAICYE AQARLRDPVY GCVAHIFALQ QQVVNLQAEL 120 SYLQAHLGPL ELPTQPLPPL LPMQLPVAPH SLSIADLPMP SASPSMPAQY DVSSLFDPTV 180 HPSSWAAGTL LRRTIDPRQF SGGCSLPTTM VEGEGDLRAL TSEFLSTQCP PRMPDTSPTP 240 CPSKKDKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-37 | 22 | 127 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-37 | 22 | 127 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00314 | DAP | Transfer from AT2G45420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010053892.1 | 1e-180 | PREDICTED: LOB domain-containing protein 30-like | ||||
Swissprot | O22131 | 4e-74 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A0D2MZ41 | 1e-87 | A0A0D2MZ41_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8J0H6 | 1e-87 | A0A1U8J0H6_GOSHI; LOB domain-containing protein 18-like | ||||
STRING | XP_010053892.1 | 1e-180 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 4e-67 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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