PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053068.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 579aa    MW: 63921.7 Da    PI: 6.8452
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053068.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like621.1e-19205262155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQkYRl 55 
                   kprl+WtpeL + F+ +v++L Gs+ A Pk+il++m    +v+ Lt+++v SHLQkYR+
  EcC053068.40 205 KPRLVWTPELNRVFIMVVDSL-GSDDAKPKKILQIMrkitGVPHLTRQNVSSHLQKYRM 262
                   79*******************.9************954445899**************8 PP
2Response_reg913e-30291361107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+++l++  y +v+ +++geeal l++e++  +D++l+D+ mpgmdGl+ll+ei++ e +lp++++++ +e++++++ ++ Ga 
  EcC053068.40  29 VLVVDDNVTCLHVLEKMLRHCSY-RVTKCRHGEEALSLIRENRsgFDIVLTDVHMPGMDGLQLLTEIANMEITLPVVMFSSDDEKDTVVKGVQSGAC 124
                   89*********************.****************9999***************************************************** PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                   dfl+Kp++++ l
  EcC053068.40 125 DFLVKPIQISTL 136
                   *******99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.4E-4225170No hitNo description
SuperFamilySSF521721.38E-3725154IPR011006CheY-like superfamily
SMARTSM004481.9E-3127140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.75628144IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.3E-2729137IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.80E-2830144No hitNo description
SuperFamilySSF466893.94E-15203266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-22204266IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-17205262IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
RAMEGVMTPD RNSDVSGEED DRFPKGLRVL VVDDNVTCLH VLEKMLRHCS YRVTKCRHGE  60
EALSLIRENR SGFDIVLTDV HMPGMDGLQL LTEIANMEIT LPVVMFSSDD EKDTVVKGVQ  120
SGACDFLVKP IQISTLKILW QHVLRSNPSL RNNSTKDLDM PHAVITSTSN DTHPQAENEE  180
ENSKTLQRSS EDEGDQSQTK SEVKKPRLVW TPELNRVFIM VVDSLGSDDA KPKKILQIMR  240
KITGVPHLTR QNVSSHLQKY RMNSKKTGEA SKHQSAHSSL VDGPGFANPT HSTSLPSSSL  300
IGCGGTQNNA ASAQYPSQAM RIAPQGPCTG CSMRMPNPVE FPNNDALPRY QIRLQSQPHA  360
PLQQLNPLLQ NFGCQQQRNE SAQRFFYASA PSAGFTSPMN NITHPVLPNQ SDTSLIVQMS  420
QTPSNRQILD ETAAARRYLS TPTHPHPLYG QISTHDSRSL NQSDASLIVQ MSQTPSNMQI  480
LDETAAARHY LSTTTHPHPL HGQISKHDSR SLNSSTPYPT SEQGLPGGLS TIGAKVNESC  540
SSNIVPVKGE FSYRNYHNAI AEDCQVYGDE AMFADKLDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hnq_A3e-14251373116Chemotaxis protein CheY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715783.10.0PREDICTED: two-component response regulator ORR21-like
STRINGXP_010026242.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-74response regulator 2