PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC052833.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 33446.9 Da PI: 6.4233 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.7 | 1.6e-47 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp+GfrFhPtd+elv++yL +k++++ +++ +i e+d+yk++P Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + EcC052833.20 8 LPAGFRFHPTDDELVNDYLIRKCASHAISV-PFICEIDLYKFDPLVLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGR--P 101 799**************************9.88***************7666789*************************************98..7 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+ap+g+kt+W+mheyrl EcC052833.20 102 KTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 132 78***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-57 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.588 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-26 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MKRAQLELPA GFRFHPTDDE LVNDYLIRKC ASHAISVPFI CEIDLYKFDP LVLPEMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGR PKTLGIKKAL VFYAGKAPRG 120 VKTNWIMHEY RLANIDRSAG KKKNSRLDDW VLCRIHNKKG TIEKHSPSTL NETADFPEME 180 IKPQIVMPAA LNPYTSPQYA HSPMTTDHMY TDSSEFLPKL HTDSSCSEHG ASPGSACEKE 240 VQSEVKWDDW EKALDFQFGS MDDFLDDALV QGQFQLDQFS PLEDMSMYLQ QSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-77 | 4 | 164 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027566.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-113 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A059AKA7 | 0.0 | A0A059AKA7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027566.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-116 | NAC family protein |