PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052828.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 498aa MW: 54934.2 Da PI: 5.9568

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052828.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	264	318	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLH rFv+av++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl EcC052828.20 264 KPRMRWTPELHVRFVDAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 318 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.275	261	321	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-31	262	319	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-17	263	318	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	264	319	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-8	266	317	IPR001005	SANT/Myb domain
Pfam	PF14379	7.8E-23	355	401	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MNGHSITLPQ SGSTKGMKNS HYTGMSLDHR FLNAESEGIS KASGWSSSSP SPLIRVEPLN 60 LNLSRESTFQ SHKTCSESSP SSPLSLASHV QTPKSTYSRS SVFCTSLYQS SSSTSEAHKH 120 LRSLPFLPHP PAYNQSVSAI DSKSSSLFSE DISNLDDEKH TESLMTDFLG FPGDTSDGSF 180 NGMDCASDNL MLTDQLELQY LSDELDLAIT DNADTPNLDD IYEARLPPSK QETELVCQQK 240 CHSPLPAIDS VSSQPSSGPA AAHKPRMRWT PELHVRFVDA VNKLDGAEKA TPKGVLKLMN 300 VEGLTIYHVK SHLQKYRLAK YMPEKKEEKK GGSSEEKKAM SCGNESDGRR KGSTQITEAL 360 RMQMEVQKQL HEQLEVQREL QLRIEEHARY LQKILEEQQK AGVVLTCPQK MSSSEDACPE 420 SELRPSSPTV AASLPWPAES KYNPKVLSLK NKASESSGTE SHECQQKRIR IEEKAESTSV 480 SDEAVVDNPS EVTQVQSC

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MNGHSITLPQ SGSTKGMKNS HYTGMSLDHR FLNAESEGIS KASGWSSSSP SPLIRVEPLN  60
LNLSRESTFQ SHKTCSESSP SSPLSLASHV QTPKSTYSRS SVFCTSLYQS SSSTSEAHKH  120
LRSLPFLPHP PAYNQSVSAI DSKSSSLFSE DISNLDDEKH TESLMTDFLG FPGDTSDGSF  180
NGMDCASDNL MLTDQLELQY LSDELDLAIT DNADTPNLDD IYEARLPPSK QETELVCQQK  240
CHSPLPAIDS VSSQPSSGPA AAHKPRMRWT PELHVRFVDA VNKLDGAEKA TPKGVLKLMN  300
VEGLTIYHVK SHLQKYRLAK YMPEKKEEKK GGSSEEKKAM SCGNESDGRR KGSTQITEAL  360
RMQMEVQKQL HEQLEVQREL QLRIEEHARY LQKILEEQQK AGVVLTCPQK MSSSEDACPE  420
SELRPSSPTV AASLPWPAES KYNPKVLSLK NKASESSGTE SHECQQKRIR IEEKAESTSV  480
SDEAVVDNPS EVTQVQSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-25	264	321	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063696.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-128	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A059BXL9	0.0	A0A059BXL9_EUCGR; Uncharacterized protein
STRING	XP_010063696.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-116	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]