PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052761.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

YABBY

Protein Properties

Length: 215aa MW: 23710.1 Da PI: 9.3563

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052761.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	141.8	7.7e-44	25	166	5	163
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 se++Cyv+CnfCnt+lav +P + ++ +vtv+CGhC++l ++ + ++ + + ++ l ++ +++++ ++++ +s s+ EcC052761.20 25 PPSEHLCYVRCNFCNTVLAVGIPCKRMLDTVTVKCGHCSNLSFLS-----TRTPLQG----QCLDHPLSLQG-FSSDFRRGQSSS----SSSST--- 104 579**********************************975422.....2222222....23333222222.222333333322....22222... PP YABBY 102 senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 s ++ +p++ p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + EcC052761.20 105 S-GDQPLSPKAAPfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 166 2.2334455555559********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.3E-55	26	169	IPR006780	YABBY protein
SuperFamily	SSF47095	1.31E-8	110	164	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.7E-5	120	165	IPR009071	High mobility group box domain
CDD	cd01390	6.84E-6	127	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010254	Biological Process	nectary development
GO:0010582	Biological Process	floral meristem determinacy
GO:0048479	Biological Process	style development

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
TYTFSSGWVE GVVNHMEDKA SMEVPPSEHL CYVRCNFCNT VLAVGIPCKR MLDTVTVKCG 60 HCSNLSFLST RTPLQGQCLD HPLSLQGFSS DFRRGQSSSS SSSTSGDQPL SPKAAPFVVK 120 PPEKKHRLPS AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARYIPHS PSGSAPGSSS 180 HVSNHPFLFL LGPIKRTCIL KKKIIKEFHL LDDGA

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.
UniProt	Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269\|PubMed:10225997, ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:10535738, ECO:0000269\|PubMed:11714690, ECO:0000269\|PubMed:15598802, ECO:0000269\|Ref.10}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00220	DAP	Transfer from AT1G69180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:15598802}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046616.1	1e-119	PREDICTED: protein CRABS CLAW
Swissprot	Q76EJ0	3e-63	YABDL_ORYSJ; Protein DROOPING LEAF
Swissprot	Q8L925	3e-63	CRC_ARATH; Protein CRABS CLAW
TrEMBL	A0A059D7D2	1e-118	A0A059D7D2_EUCGR; Uncharacterized protein
STRING	XP_010046616.1	1e-119	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9725	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	1e-58	YABBY family protein

Publications ? help Back to Top
Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development. Ann. Bot., 2014. 114(7): p. 1535-44 [PMID:24989787] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation. Nat Commun, 2017. 8(1): p. 1125 [PMID:29066759] Yamaguchi N, et al. Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Nat Commun, 2018. 9(1): p. 5290 [PMID:30538233]