PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC052752.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 222aa MW: 24668.3 Da PI: 8.5009 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00017 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H EcC052752.20 69 FSCNYCQRKFYSSQALGGHQNAH 91 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.91E-7 | 65 | 96 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport | ||||
GO:0000139 | Cellular Component | Golgi membrane | ||||
GO:0005801 | Cellular Component | cis-Golgi network | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEGMQKLEED HQRHRESKNS ALTLDLSLSR EDSCHGSNPE LDLIQGFDSD SPRNSEDTLP 60 GSETEPRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR HRIGGFAYSS MASLPLHGSY 120 NRSLGIQVHS MIHKPPHTYG HDGWSRQSLN QQPAVGRLVV QDSFRVGITT TGSSSNSGIG 180 RFDGVRKIPS AAEGMGGSWW GSVNHLDPKR DEVQKIDLSL KL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018718916.1 | 1e-161 | PREDICTED: zinc finger protein 3 | ||||
Refseq | XP_018718917.1 | 1e-161 | PREDICTED: zinc finger protein 3 | ||||
TrEMBL | A0A059AKF3 | 1e-160 | A0A059AKF3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034000.1 | 1e-160 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 2e-38 | zinc finger protein 3 |